Pavir.Bb00962 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Bb00962 T009377_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
P93392_TOBAC
M09731_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$OPBP1_01 		0.713 0.796
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb00962.1.p AP2 108 160

Links

Other AP2 family TFs
Other Panicum virgatum TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ba02374 Panicum virgatum Pavir.Ba02374 I 0.806
OS07G0410700 Oryza sativa OS07G0410700 I 0.799
ORGLA07G0097100 Oryza glaberrima ORGLA07G0097100 I 0.799
OGLUM07G10880 Oryza glumaepatula OGLUM07G10880 I 0.799
OBART07G11340 Oryza barthii OBART07G11340 I 0.799
LPERR07G06830 Leersia perrieri LPERR07G06830 I 0.799
ONIVA07G09500 Oryza nivara ONIVA07G09500 I 0.799
BGIOSGA024428 Oryza indica BGIOSGA024428 I 0.799
ORUFI07G11590 Oryza rufipogon ORUFI07G11590 I 0.799
AC233933.1_FG001 Zea mays AC233933.1_FG001 I 0.797
OPUNC07G10310 Oryza punctata OPUNC07G10310 I 0.797
OGLUM07G10870 Oryza glumaepatula OGLUM07G10870 I 0.757
MDP0000322279 Malus domestica MDP0000322279 I 0.740
GRMZM5G837876 Zea mays GRMZM5G837876 I 0.735
GRMZM2G073258 Zea mays GRMZM2G073258 I 0.735
SapurV1A.0007s0980 Salix purpurea SapurV1A.0007s0980 I 0.734
SapurV1A.2490s0030 Salix purpurea SapurV1A.2490s0030 I 0.734
POPTR_0010s08300 Populus trichocarpa POPTR_0010s08300 I 0.734
cassava47179.m1 Manihot esculenta cassava47179.m1 I 0.732
BGIOSGA024429 Oryza indica BGIOSGA024429 I 0.732
ORUFI07G11580 Oryza rufipogon ORUFI07G11580 I 0.732
OBART07G11330 Oryza barthii OBART07G11330 I 0.732
cassava22677.valid.m1 Manihot esculenta cassava22677.valid.m1 I 0.732
ONIVA01G50300 Oryza nivara ONIVA01G50300 I 0.732
ORGLA07G0097000 Oryza glaberrima ORGLA07G0097000 I 0.732
Si028088m.g Setaria italica Si028088m.g I 0.731
Gorai.005G049300 Gossypium raimondii Gorai.005G049300 I 0.730
Si027485m.g Setaria italica Si027485m.g I 0.728
Ciclev10021622m.g Citrus clementina Ciclev10021622m.g I 0.728
orange1.1g042174m.g Citrus sinensis orange1.1g042174m.g I 0.728
Pavir.Ha01264 Panicum virgatum Pavir.Ha01264 I 0.727
MDP0000447570 Malus domestica MDP0000447570 I 0.727
Pavir.Hb01336 Panicum virgatum Pavir.Hb01336 I 0.727
POPTR_0002s04020 Populus trichocarpa POPTR_0002s04020 I 0.727
LjSGA_017232.1 Lotus japonicus LjSGA_017232.1 I 0.727
SapurV1A.0006s0850 Salix purpurea SapurV1A.0006s0850 I 0.727
MDP0000246808 Malus domestica MDP0000246808 I 0.727
GLYMA10G04210 Glycine max GLYMA10G04210 I 0.727
GLYMA13G18410 Glycine max GLYMA13G18410 I 0.727
GRMZM2G379652 Zea mays GRMZM2G379652 I 0.727
Ca_07754 Cicer arietinum Ca_07754 I 0.727
GRMZM2G478965 Zea mays GRMZM2G478965 I 0.727
MTR_1g069945 Medicago truncatula MTR_1g069945 I 0.727
Cucsa.062330 Cucumis sativus Cucsa.062330 I 0.727
Gorai.004G057000 Gossypium raimondii Gorai.004G057000 I 0.727
MTR_1g074370 Medicago truncatula MTR_1g074370 I 0.726
Ca_12081 Cicer arietinum Ca_12081 I 0.726
Pavir.Hb01074 Panicum virgatum Pavir.Hb01074 I 0.726
Si032815m.g Setaria italica Si032815m.g I 0.726
GLYMA13G18350 Glycine max GLYMA13G18350 I 0.725
SapurV1A.0233s0370 Salix purpurea SapurV1A.0233s0370 I 0.725
POPTR_0005s24460 Populus trichocarpa POPTR_0005s24460 I 0.725
GLYMA13G18390 Glycine max GLYMA13G18390 I 0.725
Gorai.001G253100 Gossypium raimondii Gorai.001G253100 I 0.723
TCM_026233 Theobroma cacao TCM_026233 I 0.722
Gorai.007G281000 Gossypium raimondii Gorai.007G281000 I 0.722
Sb05g022110 Sorghum bicolor Sb05g022110 I 0.721
Traes_4AL_5E86DF14B Triticum aestivum Traes_4AL_5E86DF14B I 0.721
Traes_4AL_1A0E673DC Triticum aestivum Traes_4AL_1A0E673DC I 0.721
F775_22020 Aegilops tauschii F775_22020 I 0.721
GSMUA_Achr4G05520_001 Musa acuminata GSMUA_Achr4G05520_001 I 0.721
chr5.CM0341.90.nc Lotus japonicus chr5.CM0341.90.nc I 0.720
Pavir.J02630 Panicum virgatum Pavir.J02630 I 0.719
Pavir.Ha00307 Panicum virgatum Pavir.Ha00307 I 0.719
Pavir.J30299 Panicum virgatum Pavir.J30299 I 0.718
MLOC_77420 Hordeum vulgare MLOC_77420 I 0.717
OPUNC09G18690 Oryza punctata OPUNC09G18690 I 0.717
Traes_5BL_4E044468C Triticum aestivum Traes_5BL_4E044468C I 0.717
Cucsa.255340 Cucumis sativus Cucsa.255340 I 0.717
OB09G27130 Oryza brachyantha OB09G27130 I 0.717
Traes_5DL_53D8DF9CD Triticum aestivum Traes_5DL_53D8DF9CD I 0.717
F775_52314 Aegilops tauschii F775_52314 I 0.717
Traes_4BL_39AE2989D Triticum aestivum Traes_4BL_39AE2989D I 0.717
GRMZM2G123119 Zea mays GRMZM2G123119 I 0.716
Lus10011829.g Linum usitatissimum Lus10011829.g I 0.716
Lus10021193.g Linum usitatissimum Lus10021193.g I 0.716
Cla007697 Citrullus lanatus Cla007697 I 0.716
GLYMA19G43815 Glycine max GLYMA19G43815 I 0.715
Pavir.Ha01200 Panicum virgatum Pavir.Ha01200 I 0.715
Aquca_034_00376 Aquilegia coerulea Aquca_034_00376 I 0.715
Cla021850 Citrullus lanatus Cla021850 I 0.715
ORUFI09G22040 Oryza rufipogon ORUFI09G22040 I 0.714
Sb02g005810 Sorghum bicolor Sb02g005810 I 0.714
Sb02g012630 Sorghum bicolor Sb02g012630 I 0.714
OGLUM09G21150 Oryza glumaepatula OGLUM09G21150 I 0.714
29895.m000321 Ricinus communis 29895.m000321 I 0.714
GLYMA10G04170 Glycine max GLYMA10G04170 I 0.714
Sb02g005840 Sorghum bicolor Sb02g005840 I 0.714
BGIOSGA031313 Oryza indica BGIOSGA031313 I 0.714
OLONG_005597 Oryza longistaminata OLONG_005597 I 0.714
OS09G0572000 Oryza sativa OS09G0572000 I 0.714
LPERR09G16380 Leersia perrieri LPERR09G16380 I 0.714
ONIVA09G20840 Oryza nivara ONIVA09G20840 I 0.714
OBART09G20410 Oryza barthii OBART09G20410 I 0.714
P93392_TOBAC Nicotiana tabacum P93392_TOBAC D 0.713
Traes_4DL_CB92B5ABB Triticum aestivum Traes_4DL_CB92B5ABB I 0.713
MTR_1g069940 Medicago truncatula MTR_1g069940 I 0.713
Si031946m.g Setaria italica Si031946m.g I 0.713
Pavir.Ba03491 Panicum virgatum Pavir.Ba03491 I 0.713
Pavir.Ba02781 Panicum virgatum Pavir.Ba02781 I 0.713
F775_22331 Aegilops tauschii F775_22331 I 0.713
Pavir.J37124 Panicum virgatum Pavir.J37124 I 0.713
Pavir.J28684 Panicum virgatum Pavir.J28684 I 0.713
mgf023600m Mimulus guttatus mgf023600m I 0.712
BRADI1G00670 Brachypodium distachyon BRADI1G00670 I 0.711
GLYMA13G18340 Glycine max GLYMA13G18340 I 0.711
Ciclev10024142m.g Citrus clementina Ciclev10024142m.g I 0.709
evm.TU.supercontig_162.25 Carica papaya evm.TU.supercontig_162.25 I 0.709
OPUNC03G38860 Oryza punctata OPUNC03G38860 I 0.709
orange1.1g047387m.g Citrus sinensis orange1.1g047387m.g I 0.709
POPTR_0013s04240 Populus trichocarpa POPTR_0013s04240 I 0.709
TCM_004052 Theobroma cacao TCM_004052 I 0.709
mgf018693m Mimulus guttatus mgf018693m I 0.709
TCM_026234 Theobroma cacao TCM_026234 I 0.709
Si038911m.g Setaria italica Si038911m.g I 0.709
TRIUR3_29784 Triticum urartu TRIUR3_29784 I 0.708
Aquca_017_00711 Aquilegia coerulea Aquca_017_00711 I 0.708
SapurV1A.0021s0980 Salix purpurea SapurV1A.0021s0980 I 0.708
gene08077-v1.0-hybrid Fragaria vesca gene08077-v1.0-hybrid I 0.708
chr6.CM1613.110.nc Lotus japonicus chr6.CM1613.110.nc I 0.708
POPTR_0008s16610 Populus trichocarpa POPTR_0008s16610 I 0.708
VIT_05s0049g00510 Vitis vinifera VIT_05s0049g00510 I 0.707
Traes_2BL_0B09B840B Triticum aestivum Traes_2BL_0B09B840B I 0.707
F775_25471 Aegilops tauschii F775_25471 I 0.707
Cla006080 Citrullus lanatus Cla006080 I 0.707
MDP0000855671 Malus domestica MDP0000855671 I 0.707
MLOC_80197 Hordeum vulgare MLOC_80197 I 0.707
Cucsa.053560 Cucumis sativus Cucsa.053560 I 0.707
cassava38509.m1 Manihot esculenta cassava38509.m1 I 0.706
MDP0000235313 Malus domestica MDP0000235313 I 0.706
MDP0000167207 Malus domestica MDP0000167207 I 0.706
orange1.1g039409m.g Citrus sinensis orange1.1g039409m.g I 0.706
Pavir.Ia00066 Panicum virgatum Pavir.Ia00066 I 0.706
MDP0000127134 Malus domestica MDP0000127134 I 0.706
GLYMA10G33060 Glycine max GLYMA10G33060 I 0.706
Ciclev10005820m.g Citrus clementina Ciclev10005820m.g I 0.706
evm.TU.supercontig_44.71 Carica papaya evm.TU.supercontig_44.71 I 0.706
cassava632.valid.m1 Manihot esculenta cassava632.valid.m1 I 0.706
GLYMA20G34570 Glycine max GLYMA20G34570 I 0.706
PRUPE_ppa024173mg Prunus persica PRUPE_ppa024173mg I 0.706
MTR_1g043350 Medicago truncatula MTR_1g043350 I 0.706
Pm009382 Prunus mume Pm009382 I 0.706
Ca_23170 Cicer arietinum Ca_23170 I 0.706
Gorai.007G145800 Gossypium raimondii Gorai.007G145800 I 0.705
SapurV1A.0233s0360 Salix purpurea SapurV1A.0233s0360 I 0.705
SapurV1A.4312s0010 Salix purpurea SapurV1A.4312s0010 I 0.705
cassava38166.valid.m1 Manihot esculenta cassava38166.valid.m1 I 0.704
Lus10022935.g Linum usitatissimum Lus10022935.g I 0.704
cassava37347.valid.m1 Manihot esculenta cassava37347.valid.m1 I 0.704
29584.m000234 Ricinus communis 29584.m000234 I 0.704
Si033089m.g Setaria italica Si033089m.g I 0.703
Gorai.001G252600 Gossypium raimondii Gorai.001G252600 I 0.703
TCM_004056 Theobroma cacao TCM_004056 I 0.703
Pavir.J01078 Panicum virgatum Pavir.J01078 I 0.703
Gorai.001G176800 Gossypium raimondii Gorai.001G176800 I 0.702
Sb01g045040 Sorghum bicolor Sb01g045040 I 0.702
AMTR_s00009p00143340 Amborella trichopoda AMTR_s00009p00143340 I 0.702
Lus10021873.g Linum usitatissimum Lus10021873.g I 0.701
gene11442-v1.0-hybrid Fragaria vesca gene11442-v1.0-hybrid I 0.701
GSMUA_Achr1G01380_001 Musa acuminata GSMUA_Achr1G01380_001 I 0.700
BRADI1G72450 Brachypodium distachyon BRADI1G72450 I 0.700
29900.m001561 Ricinus communis 29900.m001561 I 0.700
Gorai.013G186700 Gossypium raimondii Gorai.013G186700 I 0.699
POPTR_0102s00200 Populus trichocarpa POPTR_0102s00200 I 0.699
TCM_020871 Theobroma cacao TCM_020871 I 0.699
Traes_2BL_304012B04 Triticum aestivum Traes_2BL_304012B04 N 0.699
F775_01237 Aegilops tauschii F775_01237 N 0.699
GSMUA_AchrUn_randomG10760_001 Musa acuminata GSMUA_AchrUn_randomG10760_001 I 0.699
POPTR_0019s03170 Populus trichocarpa POPTR_0019s03170 I 0.699
GLYMA13G18370 Glycine max GLYMA13G18370 I 0.699
Traes_2BL_3A3353970 Triticum aestivum Traes_2BL_3A3353970 N 0.699
GLYMA10G00980 Glycine max GLYMA10G00980 I 0.698
Traes_2AL_9E90C2488 Triticum aestivum Traes_2AL_9E90C2488 N 0.698
Lus10022015.g Linum usitatissimum Lus10022015.g I 0.698
Pavir.J16149 Panicum virgatum Pavir.J16149 I 0.698
Lus10042557.g Linum usitatissimum Lus10042557.g I 0.698
PRUPE_ppa023839mg Prunus persica PRUPE_ppa023839mg I 0.698
Pm020604 Prunus mume Pm020604 I 0.698
29680.m001678 Ricinus communis 29680.m001678 I 0.697
Traes_2BS_0EE99D4A6 Triticum aestivum Traes_2BS_0EE99D4A6 I 0.697
VIT_07s0005g03270 Vitis vinifera VIT_07s0005g03270 I 0.697
Ca_12221 Cicer arietinum Ca_12221 I 0.697
Pavir.Ib03413 Panicum virgatum Pavir.Ib03413 I 0.696
GSMUA_Achr6G27040_001 Musa acuminata GSMUA_Achr6G27040_001 I 0.696
SapurV1A.0816s0060 Salix purpurea SapurV1A.0816s0060 I 0.694
Sb01g000352 Sorghum bicolor Sb01g000352 I 0.693
GLYMA03G31940 Glycine max GLYMA03G31940 I 0.693
GRMZM2G381441 Zea mays GRMZM2G381441 I 0.693
GLYMA19G34696 Glycine max GLYMA19G34696 I 0.692
Cucsa.388530 Cucumis sativus Cucsa.388530 I 0.691
SapurV1A.0006s0840 Salix purpurea SapurV1A.0006s0840 I 0.690
Pavir.Bb00652 Panicum virgatum Pavir.Bb00652 I 0.690
SapurV1A.3984s0010 Salix purpurea SapurV1A.3984s0010 I 0.690
BRADI4G38930 Brachypodium distachyon BRADI4G38930 I 0.689
TRIUR3_16508 Triticum urartu TRIUR3_16508 I 0.689
Traes_4AS_9450AD3F4 Triticum aestivum Traes_4AS_9450AD3F4 I 0.689
MLOC_43207 Hordeum vulgare MLOC_43207 I 0.689
Eucgr.K03266 Eucalyptus grandis Eucgr.K03266 I 0.688
Gorai.001G253000 Gossypium raimondii Gorai.001G253000 I 0.688
VIT_14s0081g00730 Vitis vinifera VIT_14s0081g00730 I 0.688
Traes_4BL_7EC2BFC7B Triticum aestivum Traes_4BL_7EC2BFC7B I 0.687
MDP0000668122 Malus domestica MDP0000668122 I 0.686
Pavir.Ha00304 Panicum virgatum Pavir.Ha00304 I 0.686
Si028219m.g Setaria italica Si028219m.g I 0.686
Si028135m.g Setaria italica Si028135m.g I 0.686
GSMUA_Achr5G19610_001 Musa acuminata GSMUA_Achr5G19610_001 I 0.685
Si018024m.g Setaria italica Si018024m.g I 0.685
GSMUA_Achr11G22020_001 Musa acuminata GSMUA_Achr11G22020_001 I 0.685
SapurV1A.0826s0010 Salix purpurea SapurV1A.0826s0010 I 0.684
GSMUA_Achr10G09560_001 Musa acuminata GSMUA_Achr10G09560_001 I 0.684
Gorai.011G173000 Gossypium raimondii Gorai.011G173000 I 0.684
F775_22648 Aegilops tauschii F775_22648 N 0.684
VIT_07s0005g03260 Vitis vinifera VIT_07s0005g03260 I 0.683
VIT_07s0005g03230 Vitis vinifera VIT_07s0005g03230 I 0.683
Eucgr.H03088 Eucalyptus grandis Eucgr.H03088 I 0.683
GSMUA_Achr3G15550_001 Musa acuminata GSMUA_Achr3G15550_001 I 0.682
Pavir.Ib00528 Panicum virgatum Pavir.Ib00528 I 0.682
GRMZM2G016434 Zea mays GRMZM2G016434 I 0.682
Sb05g026843 Sorghum bicolor Sb05g026843 I 0.679
LPERR02G14620 Leersia perrieri LPERR02G14620 I 0.678
OBART02G18470 Oryza barthii OBART02G18470 I 0.677
ONIVA02G20490 Oryza nivara ONIVA02G20490 I 0.677
GSMUA_Achr4G12060_001 Musa acuminata GSMUA_Achr4G12060_001 I 0.677
BGIOSGA006362 Oryza indica BGIOSGA006362 I 0.677
Sb04g021160 Sorghum bicolor Sb04g021160 I 0.677
POPTR_0002s04010 Populus trichocarpa POPTR_0002s04010 I 0.677
Pavir.Aa02595 Panicum virgatum Pavir.Aa02595 I 0.677
Lus10005805.g Linum usitatissimum Lus10005805.g I 0.677
Lus10006796.g Linum usitatissimum Lus10006796.g I 0.677
e_gw1.60.113.1 Physcomitrella patens e_gw1.60.113.1 I 0.677
SapurV1A.0132s0310 Salix purpurea SapurV1A.0132s0310 I 0.677
ORUFI02G19470 Oryza rufipogon ORUFI02G19470 I 0.677
OPUNC02G16450 Oryza punctata OPUNC02G16450 I 0.677