Pavir.Bb01334 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Bb01334 T229219_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb01334.1.p Homeodomain 12 76

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ba02980 Panicum virgatum Pavir.Ba02980 N 0.867
Si030167m.g Setaria italica Si030167m.g N 0.865
Sb02g020940 Sorghum bicolor Sb02g020940 N 0.862
GRMZM2G126170 Zea mays GRMZM2G126170 N 0.861
GSMUA_Achr4G18450_001 Musa acuminata GSMUA_Achr4G18450_001 N 0.754
OLONG_009303 Oryza longistaminata OLONG_009303 N 0.745
OPUNC06G13910 Oryza punctata OPUNC06G13910 N 0.745
Bra037587 Brassica rapa Bra037587 N 0.739
Bo1g117640 Brassica oleracea Bo1g117640 N 0.739
PK03811.1 Cannabis sativa PK03811.1 N 0.736
Gorai.002G065900 Gossypium raimondii Gorai.002G065900 N 0.732
SapurV1A.0083s0320 Salix purpurea SapurV1A.0083s0320 N 0.730
POPTR_0011s09970 Populus trichocarpa POPTR_0011s09970 N 0.730
OMERI06G16500 Oryza meridionalis OMERI06G16500 N 0.728
OPUNC06G13990 Oryza punctata OPUNC06G13990 N 0.728
OS06G0485100 Oryza sativa OS06G0485100 N 0.728
ORUFI06G16210 Oryza rufipogon ORUFI06G16210 N 0.728
OLONG_009306 Oryza longistaminata OLONG_009306 N 0.728
OBART06G15310 Oryza barthii OBART06G15310 N 0.728
BGIOSGA021223 Oryza indica BGIOSGA021223 N 0.728
LPERR06G11990 Leersia perrieri LPERR06G11990 N 0.726
GRMZM2G111204 Zea mays GRMZM2G111204 N 0.722
mgf014854m Mimulus guttatus mgf014854m N 0.719
Traes_7DS_197A95728 Triticum aestivum Traes_7DS_197A95728 N 0.706
MLOC_61712 Hordeum vulgare MLOC_61712 N 0.706
TRIUR3_19251 Triticum urartu TRIUR3_19251 N 0.706
BRADI1G42040 Brachypodium distachyon BRADI1G42040 N 0.705
30209.m001510 Ricinus communis 30209.m001510 N 0.699
Eucgr.F01181 Eucalyptus grandis Eucgr.F01181 N 0.698
Aquca_052_00043 Aquilegia coerulea Aquca_052_00043 N 0.668
Ciclev10008640m.g Citrus clementina Ciclev10008640m.g N 0.654
orange1.1g016887m.g Citrus sinensis orange1.1g016887m.g N 0.654
PRUPE_ppa007389mg Prunus persica PRUPE_ppa007389mg N 0.652
gene27205-v1.0-hybrid Fragaria vesca gene27205-v1.0-hybrid N 0.651
Solyc10g007130.2 Solanum lycopersicum Solyc10g007130.2 N 0.651
TCM_046875 Theobroma cacao TCM_046875 N 0.651
VIT_19s0014g01880 Vitis vinifera VIT_19s0014g01880 N 0.649
Cucsa.032420 Cucumis sativus Cucsa.032420 N 0.649
Lus10013684.g Linum usitatissimum Lus10013684.g N 0.647
Gorai.013G172000 Gossypium raimondii Gorai.013G172000 N 0.647
Lus10017944.g Linum usitatissimum Lus10017944.g N 0.647
SapurV1A.0303s0100 Salix purpurea SapurV1A.0303s0100 N 0.646
MDP0000315095 Malus domestica MDP0000315095 N 0.645
MDP0000268133 Malus domestica MDP0000268133 N 0.645
GLYMA12G18490 Glycine max GLYMA12G18490 N 0.644
chr3.CM0282.620.nc Lotus japonicus chr3.CM0282.620.nc N 0.642
AMTR_s00011p00262800 Amborella trichopoda AMTR_s00011p00262800 N 0.642
GLYMA06G35561 Glycine max GLYMA06G35561 N 0.640
MTR_8g061040 Medicago truncatula MTR_8g061040 N 0.639
Bo5g118650 Brassica oleracea Bo5g118650 N 0.600