irf4b (Danio rerio)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSDARG00000055374 T244018_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF4
M03334_2.00 		Homo sapiens
HCGAAACCGAAACYW
WRGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF4_1 		0.933 0.933
IRF4
M05539_2.00 		Homo sapiens
NYGAAACYGAAACYN
NRGTTTCRGTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_HT-SELEX 		0.933 0.933
IRF4
M07978_2.00 		Homo sapiens
DNDVNNGWWVTGAVWVWN
NWBWBTCABWWCNNBHNH		 ChIP-seq
Gerstein et al.(2012)
GM12878_IRF4_HudsonAlpha 		0.933 0.933
IRF4
M09235_2.00 		Homo sapiens
NDWDRRGGAASTGARAVH
DBTYTCASTTCCYYHWHN		 Misc
Kulakovskiy et al.(2013)
IRF4_HUMAN.H11MO.0.A 		0.933 0.933
IRF4
M09595_2.00 		Homo sapiens
HNYGAAASYD
HRSTTTCRND		 Misc
Heinz et al.(2010)
GM12878-IRF4_GSE32465 		0.933 0.933
IRF4
M10885_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_07 		0.933 0.933
IRF4
M10886_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_08 		0.933 0.933
IRF4
M10887_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5_01 		0.933 0.933
IRF4
M10888_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5 		0.933 0.933
IRF4
M10889_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q6 		0.933 0.933
IRF4
M05540_2.00 		Homo sapiens
NYGAAASYGAWASHN
NDSTWTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_Methyl-HT-SELEX 		0.933 0.933
Irf4
M00175_2.00 		Mus musculus
NNNYGAWASN
NSTWTCRNNN		 PBM
Badis et al.(2009)
Irf4_3476 		0.924 0.924
Irf4
M09243_2.00 		Mus musculus
NDAWVVRGAASTGARAVH
DBTYTCASTTCYBBWTHN		 Misc
Kulakovskiy et al.(2013)
IRF4_MOUSE.H11MO.0.A 		0.924 0.924
IRF8
M03335_2.00 		Homo sapiens
HCGAAACYGAAACY
RGTTTCRGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_1 		0.781 0.781
IRF8
M03336_2.00 		Homo sapiens
HCGAAACCGAAACT
AGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_2 		0.781 0.781
IRF8
M05541_2.00 		Homo sapiens
NYGAAASYGAAASHN
NDSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX 		0.781 0.781
IRF8
M05543_2.00 		Homo sapiens
NCGAAACYGAAACYN
NRGTTTCRGTTTCGN		 SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX 		0.781 0.781
IRF8
M09236_2.00 		Homo sapiens
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B 		0.781 0.781
Irf8
M09246_2.00 		Mus musculus
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A 		0.781 0.781
IRF8
M10890_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ICSBP_Q6 		0.781 0.781
IRF8
M10891_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF8_Q6 		0.781 0.781
IRF8
M05542_2.00 		Homo sapiens
NYGAAASYGAAASYN
NRSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX 		0.781 0.781
IRF8
M05544_2.00 		Homo sapiens
NYGAAASYGAAACYD
HRGTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX 		0.781 0.781
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000119326 IRF 17 122

Links

Other IRF family TFs
Other Danio rerio TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
irf4b Takifugu rubripes ENSTRUG00000002946 I 0.971
irf4b Oryzias latipes ENSORLG00000012712 I 0.962
ENSXMAG00000006246 Xiphophorus maculatus ENSXMAG00000006246 I 0.952
Brh_R000433 Buceros rhinoceros Brh_R000433 I 0.952
ENSAMXG00000006093 Astyanax mexicanus ENSAMXG00000006093 I 0.952
ENSPFOG00000000657 Poecilia formosa ENSPFOG00000000657 I 0.952
ENSONIG00000006398 Oreochromis niloticus ENSONIG00000006398 I 0.952
Tal_R010571 Tyto alba Tal_R010571 I 0.948
Aan_R012662 Calypte anna Aan_R012662 I 0.943
Alligator_sinensis_CCG015622.1 Alligator sinensis Alligator_sinensis_CCG015622.1 I 0.943
Afo_R014746 Aptenodytes forsteri Afo_R014746 I 0.943
ENSFALG00000013071 Ficedula albicollis ENSFALG00000013071 I 0.943
ENSGALG00000012830 Gallus gallus ENSGALG00000012830 I 0.943
Cmyd_10011521 Chelonia mydas Cmyd_10011521 I 0.943
irf4b Tetraodon nigroviridis ENSTNIG00000008222 I 0.943
IRF4 Taeniopygia guttata ENSTGUG00000002144 I 0.943
irf4b Gasterosteus aculeatus ENSGACG00000004966 I 0.943
Gfo_R003357 Geospiza fortis Gfo_R003357 I 0.943
ENSAPLG00000014646 Anas platyrhynchos ENSAPLG00000014646 I 0.943
Ogr05775 Ophisaurus gracilis Ogr05775 I 0.943
IRF4 Anolis carolinensis ENSACAG00000017711 I 0.943
IRF4 Pan troglodytes ENSPTRG00000017656 I 0.933
IRF4 Loxodonta africana ENSLAFG00000017235 I 0.933
IRF4 Pteropus vampyrus ENSPVAG00000005078 I 0.933
ENSSTOG00000011470 Ictidomys tridecemlineatus ENSSTOG00000011470 I 0.933
IRF4 Gorilla gorilla ENSGGOG00000012342 I 0.933
Pvit_05673 Pogona vitticeps Pvit_05673 I 0.933
ENSP00000370343-D1 Bos grunniens ENSP00000370343-D1 I 0.933
ENSLOCG00000013008 Lepisosteus oculatus ENSLOCG00000013008 I 0.933
ENSPSIG00000011619 Pelodiscus sinensis ENSPSIG00000011619 I 0.933
ENSAMEG00000005976 Ailuropoda melanoleuca ENSAMEG00000005976 I 0.933
ENSOARG00000003822 Ovis aries ENSOARG00000003822 I 0.933
IRF4 Ochotona princeps ENSOPRG00000012683 I 0.933
ENSNLEG00000010631 Nomascus leucogenys ENSNLEG00000010631 I 0.933
ENSMPUG00000007848 Mustela putorius furo ENSMPUG00000007848 I 0.933
IRF4 Macaca mulatta ENSMMUG00000018513 I 0.933
ENSPPYG00000016161 Pongo abelii ENSPPYG00000016161 I 0.933
IRF4 Myotis lucifugus ENSMLUG00000010058 I 0.933
IRF4 Tupaia belangeri ENSTBEG00000012240 I 0.933
IRF4 Homo sapiens ENSG00000137265 D 0.933
IRF4 Echinops telfairi ENSETEG00000018472 I 0.933
Irf4 Dipodomys ordii ENSDORG00000014895 I 0.933
IRF4 Felis catus ENSFCAG00000022941 I 0.933
IRF4 Bos taurus ENSBTAG00000002929 I 0.933
IRF4 Otolemur garnettii ENSOGAG00000014574 I 0.933
ENSCSAG00000007164 Chlorocebus sabaeus ENSCSAG00000007164 I 0.933
IRF4 Cavia porcellus ENSCPOG00000003562 I 0.933
IRF4 Callithrix jacchus ENSCJAG00000019524 I 0.933
IRF4 Equus caballus ENSECAG00000016808 I 0.933
Irf4 Mus musculus ENSMUSG00000021356 D 0.924
IRF4 Monodelphis domestica ENSMODG00000008383 I 0.924
ENSMEUG00000002440 Macropus eugenii ENSMEUG00000002440 I 0.924
ENSAMXG00000016370 Astyanax mexicanus ENSAMXG00000016370 I 0.924
IRF4 Tursiops truncatus ENSTTRG00000001849 I 0.924
ENSSHAG00000015592 Sarcophilus harrisii ENSSHAG00000015592 I 0.924
Irf4 Rattus norvegicus ENSRNOG00000061070 I 0.924
IRF4 Oryctolagus cuniculus ENSOCUG00000009374 I 0.914
irf4a Danio rerio ENSDARG00000006560 I 0.914
ENSGMOG00000016994 Gadus morhua ENSGMOG00000016994 I 0.914
irf4 Xenopus tropicalis XB-GENE-988321 I 0.895
Myotis_brandtii_Irf4_10020370 Myotis brandtii Myotis_brandtii_Irf4_10020370 I 0.895
ENSPFOG00000015506 Poecilia formosa ENSPFOG00000015506 I 0.886
ENSXMAG00000017015 Xiphophorus maculatus ENSXMAG00000017015 I 0.886
ENSONIG00000009637 Oreochromis niloticus ENSONIG00000009637 I 0.886
irf4a Oryzias latipes ENSORLG00000017242 I 0.867
irf4a Gasterosteus aculeatus ENSGACG00000016461 I 0.867
ENSGMOG00000005047 Gadus morhua ENSGMOG00000005047 I 0.867
IRF4 Erinaceus europaeus ENSEEUG00000007703 I 0.867
irf4a Takifugu rubripes ENSTRUG00000011568 I 0.857
ENSAMXG00000012775 Astyanax mexicanus ENSAMXG00000012775 I 0.857
irf4a Tetraodon nigroviridis ENSTNIG00000005370 I 0.857
Cmyd_10021085 Chelonia mydas Cmyd_10021085 I 0.798
IRF8 Pteropus vampyrus ENSPVAG00000003758 I 0.798
Myotis_brandtii_IRF8_10035313 Myotis brandtii Myotis_brandtii_IRF8_10035313 I 0.798
ENSPSIG00000011788 Pelodiscus sinensis ENSPSIG00000011788 I 0.798
IRF8 Oryctolagus cuniculus ENSOCUG00000000536 I 0.798
IRF8 Canis familiaris ENSCAFG00000019919 I 0.798
IRF8 Felis catus ENSFCAG00000007615 I 0.798
IRF8 Myotis lucifugus ENSMLUG00000005109 I 0.798
ENSAMEG00000018268 Ailuropoda melanoleuca ENSAMEG00000018268 I 0.798
IRF8 Pan troglodytes ENSPTRG00000008435 I 0.790
IRF8 Macaca mulatta ENSMMUG00000008125 I 0.790
IRF8 Loxodonta africana ENSLAFG00000010973 I 0.790
IRF8 Gorilla gorilla ENSGGOG00000028251 I 0.790
IRF8 Dasypus novemcinctus ENSDNOG00000038898 I 0.790
ENSCSAG00000003142 Chlorocebus sabaeus ENSCSAG00000003142 I 0.790
ENSPPYG00000007620 Pongo abelii ENSPPYG00000007620 I 0.790
ENSP00000268638 Macaca fascicularis ENSP00000268638 I 0.790
ENSPANG00000024770 Papio anubis ENSPANG00000024770 I 0.790
IRF8 Procavia capensis ENSPCAG00000004460 I 0.790
ENSNLEG00000011429 Nomascus leucogenys ENSNLEG00000011429 I 0.790
Alligator_sinensis_CCG008430.1 Alligator sinensis Alligator_sinensis_CCG008430.1 I 0.788
ENSFALG00000006647 Ficedula albicollis ENSFALG00000006647 I 0.788
ENSP00000268638-D1 Bos grunniens ENSP00000268638-D1 I 0.781
IRF8 Callithrix jacchus ENSCJAG00000017331 I 0.781
ENSOARG00000011513 Ovis aries ENSOARG00000011513 I 0.781
IRF8 Bos taurus ENSBTAG00000017824 I 0.781
IRF8 Homo sapiens ENSG00000140968 D 0.781
IRF8 Otolemur garnettii ENSOGAG00000009262 I 0.781
irf8.L Xenopus laevis XB-GENE-985949 I 0.781
Irf8 Mus musculus ENSMUSG00000041515 D 0.781
IRF8 Anolis carolinensis ENSACAG00000005409 I 0.781
ENSSTOG00000028363 Ictidomys tridecemlineatus ENSSTOG00000028363 I 0.781
IRF8 Monodelphis domestica ENSMODG00000004572 I 0.781
IRF8 Ochotona princeps ENSOPRG00000002139 I 0.781
ENSLACG00000007228 Latimeria chalumnae ENSLACG00000007228 I 0.781
ENSMPUG00000008641 Mustela putorius furo ENSMPUG00000008641 I 0.781
IRF8 Ornithorhynchus anatinus ENSOANG00000003741 I 0.781
ENSSHAG00000006901 Sarcophilus harrisii ENSSHAG00000006901 I 0.781
ENSCPOG00000027266 Cavia porcellus ENSCPOG00000027266 I 0.779
Afo_R011419 Aptenodytes forsteri Afo_R011419 I 0.779
Tal_R007108 Tyto alba Tal_R007108 I 0.779
Brh_R009589 Buceros rhinoceros Brh_R009589 I 0.771
Aan_R009222 Calypte anna Aan_R009222 I 0.771
IRF8 Gallus gallus ENSGALG00000005757 I 0.771
ENSLOCG00000001013 Lepisosteus oculatus ENSLOCG00000001013 I 0.771
Pvit_16863 Pogona vitticeps Pvit_16863 I 0.771
Irf8 Rattus norvegicus ENSRNOG00000017869 I 0.762
IRF8 Erinaceus europaeus ENSEEUG00000002644 I 0.762
Gfo_R000501 Geospiza fortis Gfo_R000501 I 0.762
ENSLOCG00000003532 Lepisosteus oculatus ENSLOCG00000003532 I 0.762
ENSLACG00000005859 Latimeria chalumnae ENSLACG00000005859 I 0.762
IRF8 Tupaia belangeri ENSTBEG00000013828 I 0.762
Afo_R010468 Aptenodytes forsteri Afo_R010468 I 0.754
irf10 Danio rerio ENSDARG00000027658 I 0.752
ENSAMXG00000002697 Astyanax mexicanus ENSAMXG00000002697 I 0.743
Ogr08841 Ophisaurus gracilis Ogr08841 I 0.743
irf8 Oryzias latipes ENSORLG00000018216 I 0.733
ENSGMOG00000003945 Gadus morhua ENSGMOG00000003945 I 0.731
ENSTNIG00000002469 Tetraodon nigroviridis ENSTNIG00000002469 I 0.730
ENSAMXG00000003452 Astyanax mexicanus ENSAMXG00000003452 I 0.724
ENSTGUG00000006609 Taeniopygia guttata ENSTGUG00000006609 I 0.724
irf8 Takifugu rubripes ENSTRUG00000018213 I 0.724
ENSXMAG00000003082 Xiphophorus maculatus ENSXMAG00000003082 I 0.724
ENSFALG00000005506 Ficedula albicollis ENSFALG00000005506 I 0.724
ENSPFOG00000017639 Poecilia formosa ENSPFOG00000017639 I 0.714
ENSGALG00000006448 Gallus gallus ENSGALG00000006448 I 0.714
irf8 Danio rerio ENSDARG00000056407 I 0.714
irf9 Tetraodon nigroviridis ENSTNIG00000008698 I 0.705
ENSONIG00000005631 Oreochromis niloticus ENSONIG00000005631 I 0.705
ENSLACG00000004633 Latimeria chalumnae ENSLACG00000004633 I 0.705
irf8 Gasterosteus aculeatus ENSGACG00000015958 I 0.705
irf9 Takifugu rubripes ENSTRUG00000017722 I 0.705
ENSAMXG00000004911 Astyanax mexicanus ENSAMXG00000004911 I 0.705
irf9 Danio rerio ENSDARG00000016457 I 0.702