AMTR_s00032p00142260 (Amborella trichopoda)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 AMTR_s00032p00142260 T244844_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.860 0.860
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.754 0.754
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN14856 LOB 17 73

Links

Other LOB family TFs
Other Amborella trichopoda TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK17019.1 Cannabis sativa PK17019.1 I 0.912
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.904
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.895
MDP0000121203 Malus domestica MDP0000121203 I 0.895
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.895
Pm010668 Prunus mume Pm010668 I 0.895
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.885
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.877
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.860
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.860
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.860
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.860
OS03G0659700 Oryza sativa OS03G0659700 I 0.851
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.842
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.842
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.807
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.789
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.772
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.772
MDP0000265429 Malus domestica MDP0000265429 I 0.754
Sb05g000550 Sorghum bicolor Sb05g000550 I 0.745
OLONG_023571 Oryza longistaminata OLONG_023571 I 0.737
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.737
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.737
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.737
PK09808.1 Cannabis sativa PK09808.1 I 0.732
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.719
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.719
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.719
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.719
Si011647m.g Setaria italica Si011647m.g I 0.719
Si024229m.g Setaria italica Si024229m.g I 0.719
mgf018189m Mimulus guttatus mgf018189m I 0.719
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.719
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.718
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.704
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.702
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.702
OS05G0123000 Oryza sativa OS05G0123000 I 0.702
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.702
Traes_4AL_AD9C8CB77 Triticum aestivum Traes_4AL_AD9C8CB77 I 0.702
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.702
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.702