PK09808.1 (Cannabis sativa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 PK09808.1 T247380_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.804 0.804
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK09808.1 LOB 1 56

Links

Other LOB family TFs
Other Cannabis sativa TFs

98 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_13388 Cicer arietinum Ca_13388 I 0.929
PK17019.1 Cannabis sativa PK17019.1 I 0.912
mgf018189m Mimulus guttatus mgf018189m I 0.911
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.911
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.911
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.911
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.911
Si011647m.g Setaria italica Si011647m.g I 0.911
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.893
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.893
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.893
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.893
Si024229m.g Setaria italica Si024229m.g I 0.893
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.893
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.893
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.893
Sb05g000550 Sorghum bicolor Sb05g000550 I 0.891
MDP0000265429 Malus domestica MDP0000265429 I 0.875
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.875
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.875
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.857
LjSGA_062507.1.1 Lotus japonicus LjSGA_062507.1.1 I 0.828
ORUFI11G00360 Oryza rufipogon ORUFI11G00360 N 0.821
OS11G0106900 Oryza sativa OS11G0106900 I 0.821
OS12G0106200 Oryza sativa OS12G0106200 I 0.821
ORGLA11G0005800 Oryza glaberrima ORGLA11G0005800 I 0.821
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.821
BGIOSGA036857 Oryza indica BGIOSGA036857 I 0.821
BGIOSGA034653 Oryza indica BGIOSGA034653 I 0.821
Lus10017431.g Linum usitatissimum Lus10017431.g I 0.821
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.821
OS03G0659700 Oryza sativa OS03G0659700 I 0.809
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.804
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.804
mgf022958m Mimulus guttatus mgf022958m I 0.804
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.804
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.804
Pm010668 Prunus mume Pm010668 I 0.804
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.804
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.804
MDP0000121203 Malus domestica MDP0000121203 I 0.804
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.804
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.804
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.804
Cla013598 Citrullus lanatus Cla013598 I 0.786
MDP0000284409 Malus domestica MDP0000284409 I 0.786
Pm011040 Prunus mume Pm011040 I 0.786
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.786
MDP0000268890 Malus domestica MDP0000268890 I 0.786
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.786
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.786
30169.m006340 Ricinus communis 30169.m006340 I 0.786
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.786
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.786
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.786
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.786
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.786
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.786
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.786
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.786
OBART02G29970 Oryza barthii OBART02G29970 N 0.769
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.769
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.769
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.768
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.768
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.768
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.768
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.768
Cla000556 Citrullus lanatus Cla000556 I 0.768
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.768
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.750
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.750
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.750
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.750
evm.TU.contig_40341.1 Carica papaya evm.TU.contig_40341.1 I 0.744
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.741
LBD11 Arabidopsis thaliana AT2G28500 N 0.732
Traes_4AL_AD9C8CB77 Triticum aestivum Traes_4AL_AD9C8CB77 I 0.732
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.732
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.732
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.732
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.732
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.732
AMTR_s00032p00142260 Amborella trichopoda AMTR_s00032p00142260 I 0.732
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.732
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.732
ORGLA02G0255200 Oryza glaberrima ORGLA02G0255200 N 0.719
BGIOSGA016336 Oryza indica BGIOSGA016336 N 0.714
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.714
OBART04G11480 Oryza barthii OBART04G11480 N 0.714
ONIVA04G09470 Oryza nivara ONIVA04G09470 N 0.714
Bra035698 Brassica rapa Bra035698 N 0.714
Bra018675 Brassica rapa Bra018675 N 0.714
Bo5g008590 Brassica oleracea Bo5g008590 N 0.714
OS05G0123000 Oryza sativa OS05G0123000 I 0.702
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.702
OLONG_023571 Oryza longistaminata OLONG_023571 I 0.702
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.702