Gorai.004G012800 (Gossypium raimondii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Gorai.004G012800 T246949_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G012800.1 LOB 37 135

Links

Other LOB family TFs
Other Gossypium raimondii TFs

277 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_40341.1 Carica papaya evm.TU.contig_40341.1 I 1.000
TCM_041094 Theobroma cacao TCM_041094 I 0.980
30111.m000703 Ricinus communis 30111.m000703 I 0.980
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.970
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.970
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.960
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.960
PK27389.1 Cannabis sativa PK27389.1 I 0.960
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.960
Pm000938 Prunus mume Pm000938 I 0.960
MDP0000218986 Malus domestica MDP0000218986 I 0.949
MDP0000318244 Malus domestica MDP0000318244 I 0.949
Ca_14605 Cicer arietinum Ca_14605 I 0.949
MDP0000319331 Malus domestica MDP0000319331 I 0.949
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.949
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.949
LjSGA_079940.1 Lotus japonicus LjSGA_079940.1 N 0.944
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.939
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.939
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.939
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.939
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.929
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.929
Cla000556 Citrullus lanatus Cla000556 I 0.929
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.929
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.929
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.929
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.929
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.929
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.923
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.919
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.919
PK23777.1 Cannabis sativa PK23777.1 I 0.919
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.919
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.919
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.919
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.919
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.919
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.919
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.919
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.919
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.909
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.909
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.909
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.909
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.909
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.909
TCM_043081 Theobroma cacao TCM_043081 I 0.909
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.899
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.899
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.899
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.899
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.899
Ca_04287 Cicer arietinum Ca_04287 I 0.899
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.899
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.899
MDP0000151784 Malus domestica MDP0000151784 I 0.889
Pm018585 Prunus mume Pm018585 I 0.889
Cla020379 Citrullus lanatus Cla020379 I 0.889
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.889
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.889
MDP0000123013 Malus domestica MDP0000123013 I 0.889
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.889
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.889
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.889
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.879
OB05G11740 Oryza brachyantha OB05G11740 I 0.879
mgf015666m Mimulus guttatus mgf015666m N 0.879
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.879
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.879
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.879
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.879
PGSC0003DMG400027372 Solanum tuberosum PGSC0003DMG400027372 I 0.872
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.869
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.869
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.869
MDP0000879799 Malus domestica MDP0000879799 N 0.869
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.869
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.869
Ca_02507 Cicer arietinum Ca_02507 N 0.869
LBD11 Arabidopsis thaliana AT2G28500 N 0.869
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.869
Bo5g008590 Brassica oleracea Bo5g008590 N 0.869
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.869
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.869
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.869
Cla005134 Citrullus lanatus Cla005134 N 0.869
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.869
Bra018675 Brassica rapa Bra018675 N 0.869
Bo01039s010 Brassica oleracea Bo01039s010 N 0.859
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.859
Bra000491 Brassica rapa Bra000491 N 0.859
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.859
MDP0000822986 Malus domestica MDP0000822986 I 0.859
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.859
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.859
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.859
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.859
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.859
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.859
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.852
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.849
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.848
Si024430m.g Setaria italica Si024430m.g N 0.848
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.848
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.848
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.848
Bra011942 Brassica rapa Bra011942 N 0.848
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.848
Bra035698 Brassica rapa Bra035698 N 0.848
Bo4g165420 Brassica oleracea Bo4g165420 N 0.848
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.848
PDK_20s1595351g001 Phoenix dactylifera PDK_20s1595351g001 N 0.846
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.842
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.842
OS05G0123000 Oryza sativa OS05G0123000 I 0.842
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.838
F775_02335 Aegilops tauschii F775_02335 N 0.838
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.838
Bo3g040220 Brassica oleracea Bo3g040220 N 0.838
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.838
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.838
OBART03G13260 Oryza barthii OBART03G13260 N 0.838
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.838
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.838
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.838
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.838
OS03G0287400 Oryza sativa OS03G0287400 N 0.838
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.838
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.838
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.838
OB03G23270 Oryza brachyantha OB03G23270 N 0.828
mgf022524m Mimulus guttatus mgf022524m N 0.828
Si037280m.g Setaria italica Si037280m.g N 0.828
Bo8g112780 Brassica oleracea Bo8g112780 N 0.828
PK17019.1 Cannabis sativa PK17019.1 I 0.824
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.818
Bra031599 Brassica rapa Bra031599 N 0.818
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.818
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.818
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.818
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.818
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.818
Cla005133 Citrullus lanatus Cla005133 N 0.818
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.818
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.818
OPUNC05G01600 Oryza punctata OPUNC05G01600 N 0.814
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.812
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.808
OBART05G01640 Oryza barthii OBART05G01640 N 0.808
OMERI05G01740 Oryza meridionalis OMERI05G01740 N 0.804
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.804
OMERI05G01730 Oryza meridionalis OMERI05G01730 N 0.800
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.798
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.798
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.798
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.798
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.798
mgf019622m Mimulus guttatus mgf019622m N 0.788
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.787
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N 0.782
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.778
OLONG_017777 Oryza longistaminata OLONG_017777 N 0.769
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.769
PK09808.1 Cannabis sativa PK09808.1 I 0.768
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.768
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.768
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.768
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.768
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.768
evm.TU.contig_40341.2 Carica papaya evm.TU.contig_40341.2 N 0.761
GSMUA_Achr9G04330_001 Musa acuminata GSMUA_Achr9G04330_001 N 0.758
Cucsa.275710 Cucumis sativus Cucsa.275710 N 0.758
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.758
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.758
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.747
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.747
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.747
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.747
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.737
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.737
cassava4159.m1 Manihot esculenta cassava4159.m1 N 0.731
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.731
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.727
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.727
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.727
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.727
MDP0000121203 Malus domestica MDP0000121203 I 0.727
Sb05g000550 Sorghum bicolor Sb05g000550 I 0.727
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.727
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.727
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.727
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.727
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.727
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.727
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.727
Ca_13575 Cicer arietinum Ca_13575 I 0.727
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.727
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.727
LBD4 Arabidopsis thaliana AT1G31320 D 0.727
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.727
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.727
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.727
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.727
MDP0000183071 Malus domestica MDP0000183071 N 0.725
OS03G0659700 Oryza sativa OS03G0659700 I 0.723
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.717
PK24688.1 Cannabis sativa PK24688.1 I 0.717
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.717
Bra014907 Brassica rapa Bra014907 I 0.717
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.717
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.717
MDP0000268890 Malus domestica MDP0000268890 I 0.717
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.717
MDP0000284409 Malus domestica MDP0000284409 I 0.717
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.717
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.717
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.717
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.717
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.717
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.717
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.717
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.717
PK11564.1 Cannabis sativa PK11564.1 I 0.717
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.717
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.717
TCM_032557 Theobroma cacao TCM_032557 I 0.717
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.717
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.717
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.717
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.717
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.717
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.717
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.717
mgf026046m Mimulus guttatus mgf026046m I 0.717
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.717
30169.m006340 Ricinus communis 30169.m006340 I 0.717
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.717
Pm011040 Prunus mume Pm011040 I 0.717
Cla013678 Citrullus lanatus Cla013678 I 0.717
Ca_06548 Cicer arietinum Ca_06548 I 0.717
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.717
Si037583m.g Setaria italica Si037583m.g I 0.717
TCM_029315 Theobroma cacao TCM_029315 I 0.717
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.717
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.717
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.717
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.717
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.717
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.717
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.717
orange1.1g038565m.g Citrus sinensis orange1.1g038565m.g I 0.710
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.707
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.707
mgf018189m Mimulus guttatus mgf018189m I 0.707
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.707
Ca_12450 Cicer arietinum Ca_12450 I 0.707
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.707
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.707
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.707
F775_08326 Aegilops tauschii F775_08326 I 0.707
Bo7g041000 Brassica oleracea Bo7g041000 I 0.707
Pm018982 Prunus mume Pm018982 I 0.707
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.707
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.707
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.707
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.707
Eucgr.G03089 Eucalyptus grandis Eucgr.G03089 I 0.707
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.707
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.707
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.707
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.707
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.707
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.707
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.707
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.707
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.707