Solyc05g048740.2 (Solanum lycopersicum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Solyc05g048740.2 T246089_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc05g048740.2.1 LOB 54 152

Links

Other LOB family TFs
Other Solanum lycopersicum TFs

205 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.929
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.929
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.929
Ca_04287 Cicer arietinum Ca_04287 I 0.919
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.919
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.919
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.909
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.899
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.899
mgf022524m Mimulus guttatus mgf022524m N 0.899
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.899
Cla020379 Citrullus lanatus Cla020379 I 0.889
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.889
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.889
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.889
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.889
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.879
PK23777.1 Cannabis sativa PK23777.1 I 0.879
Pm018585 Prunus mume Pm018585 I 0.879
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.879
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.879
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.879
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.879
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.879
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.879
TCM_043081 Theobroma cacao TCM_043081 I 0.879
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.879
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.869
MDP0000123013 Malus domestica MDP0000123013 I 0.869
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.869
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.869
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.869
PK27389.1 Cannabis sativa PK27389.1 I 0.869
TCM_041094 Theobroma cacao TCM_041094 I 0.869
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.869
Cla005134 Citrullus lanatus Cla005134 N 0.869
Ca_14605 Cicer arietinum Ca_14605 I 0.869
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.869
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.869
30111.m000703 Ricinus communis 30111.m000703 I 0.869
MDP0000151784 Malus domestica MDP0000151784 I 0.869
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.869
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.869
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.859
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.859
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.859
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.859
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.859
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.859
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.859
mgf019622m Mimulus guttatus mgf019622m N 0.859
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.859
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.859
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.859
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.859
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.859
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.859
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.848
Bo01039s010 Brassica oleracea Bo01039s010 N 0.848
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.848
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.848
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.848
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.848
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.848
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.848
MDP0000319331 Malus domestica MDP0000319331 I 0.848
MDP0000822986 Malus domestica MDP0000822986 I 0.848
mgf015666m Mimulus guttatus mgf015666m N 0.848
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.848
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.848
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.848
Pm000938 Prunus mume Pm000938 I 0.848
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.838
Bra018675 Brassica rapa Bra018675 N 0.838
MDP0000218986 Malus domestica MDP0000218986 I 0.838
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.838
Bra035698 Brassica rapa Bra035698 N 0.838
Bra011942 Brassica rapa Bra011942 N 0.838
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.838
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.838
Bo5g008590 Brassica oleracea Bo5g008590 N 0.838
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.838
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.838
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.838
Bo4g165420 Brassica oleracea Bo4g165420 N 0.838
OB05G11740 Oryza brachyantha OB05G11740 I 0.838
MDP0000879799 Malus domestica MDP0000879799 N 0.838
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.838
LBD11 Arabidopsis thaliana AT2G28500 N 0.838
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.838
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.838
Cla000556 Citrullus lanatus Cla000556 I 0.838
MDP0000318244 Malus domestica MDP0000318244 I 0.838
Bo8g112780 Brassica oleracea Bo8g112780 N 0.828
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.828
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.818
Bra031599 Brassica rapa Bra031599 N 0.818
Cla005133 Citrullus lanatus Cla005133 N 0.818
Bra000491 Brassica rapa Bra000491 N 0.818
Bo3g040220 Brassica oleracea Bo3g040220 N 0.818
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.818
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.818
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.818
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.808
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.808
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.808
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.808
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.808
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.808
Ca_02507 Cicer arietinum Ca_02507 N 0.808
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.804
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.798
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.798
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.798
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.798
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.798
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.798
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.788
Si024430m.g Setaria italica Si024430m.g N 0.788
OBART05G01640 Oryza barthii OBART05G01640 N 0.788
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.787
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.787
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.784
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.778
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.774
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.768
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.768
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.768
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.768
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.768
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.758
OBART03G13260 Oryza barthii OBART03G13260 N 0.758
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.758
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.758
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.758
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.758
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.758
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.758
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.758
OS03G0287400 Oryza sativa OS03G0287400 N 0.758
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.758
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.758
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.747
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.747
Si037280m.g Setaria italica Si037280m.g N 0.747
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.747
OB03G23270 Oryza brachyantha OB03G23270 N 0.747
OPUNC05G01600 Oryza punctata OPUNC05G01600 N 0.746
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.737
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.737
F775_02335 Aegilops tauschii F775_02335 N 0.737
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.737
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.737
OMERI05G01730 Oryza meridionalis OMERI05G01730 N 0.733
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.731
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.727
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.727
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.727
mgf026046m Mimulus guttatus mgf026046m I 0.727
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.727
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.727
PK11564.1 Cannabis sativa PK11564.1 I 0.717
mgf018189m Mimulus guttatus mgf018189m I 0.717
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.717
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.717
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.717
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.717
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.717
GSMUA_Achr9G04330_001 Musa acuminata GSMUA_Achr9G04330_001 N 0.717
MDP0000284409 Malus domestica MDP0000284409 I 0.707
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.707
MDP0000268890 Malus domestica MDP0000268890 I 0.707
MDP0000121203 Malus domestica MDP0000121203 I 0.707
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.707
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.707
TCM_032557 Theobroma cacao TCM_032557 I 0.707
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.707
Pm011040 Prunus mume Pm011040 I 0.707
Cla013678 Citrullus lanatus Cla013678 I 0.707
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.707
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.707
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.707
LBD4 Arabidopsis thaliana AT1G31320 D 0.707
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.707
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.707
30169.m006340 Ricinus communis 30169.m006340 I 0.707
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.707
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.707
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.707
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.707
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.707
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.707
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.707
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.707
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.707
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
Cucsa.275710 Cucumis sativus Cucsa.275710 N 0.707
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.707
mgf022958m Mimulus guttatus mgf022958m I 0.707
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.707