Lus10040373.g (Linum usitatissimum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Lus10040373.g T247064_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10040373 LOB 77 175

Links

Other LOB family TFs
Other Linum usitatissimum TFs

226 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.949
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.949
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.939
Ca_04287 Cicer arietinum Ca_04287 I 0.929
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.929
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.929
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.929
PK27389.1 Cannabis sativa PK27389.1 I 0.929
PK23777.1 Cannabis sativa PK23777.1 I 0.919
TCM_041094 Theobroma cacao TCM_041094 I 0.919
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.919
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.919
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.919
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.919
30111.m000703 Ricinus communis 30111.m000703 I 0.919
Cla020379 Citrullus lanatus Cla020379 I 0.919
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.919
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.909
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.909
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.909
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.909
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.909
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.909
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.909
Ca_14605 Cicer arietinum Ca_14605 I 0.899
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.899
MDP0000123013 Malus domestica MDP0000123013 I 0.899
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.899
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.899
MDP0000319331 Malus domestica MDP0000319331 I 0.899
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.899
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.899
MDP0000151784 Malus domestica MDP0000151784 I 0.899
Pm000938 Prunus mume Pm000938 I 0.899
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.899
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.899
Pm018585 Prunus mume Pm018585 I 0.889
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.889
Cla005134 Citrullus lanatus Cla005134 N 0.889
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.889
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.889
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.889
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.889
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.889
mgf015666m Mimulus guttatus mgf015666m N 0.889
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.889
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.889
TCM_043081 Theobroma cacao TCM_043081 I 0.889
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.879
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.879
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.879
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.879
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.879
MDP0000822986 Malus domestica MDP0000822986 I 0.879
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.879
mgf022524m Mimulus guttatus mgf022524m N 0.879
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.879
MDP0000218986 Malus domestica MDP0000218986 I 0.879
MDP0000318244 Malus domestica MDP0000318244 I 0.879
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.879
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.879
evm.TU.contig_40341.1 Carica papaya evm.TU.contig_40341.1 I 0.872
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.870
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.869
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.869
Cla000556 Citrullus lanatus Cla000556 I 0.869
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.869
MDP0000879799 Malus domestica MDP0000879799 N 0.869
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.869
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.869
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.869
mgf019622m Mimulus guttatus mgf019622m N 0.869
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.869
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.869
OB05G11740 Oryza brachyantha OB05G11740 I 0.869
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.869
LjSGA_079940.1 Lotus japonicus LjSGA_079940.1 N 0.861
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.859
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.859
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.859
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.859
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.859
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.859
PK17019.1 Cannabis sativa PK17019.1 I 0.853
LBD11 Arabidopsis thaliana AT2G28500 N 0.848
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.848
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.848
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.848
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.848
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.848
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.848
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.848
Bra000491 Brassica rapa Bra000491 N 0.838
Bo5g008590 Brassica oleracea Bo5g008590 N 0.838
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.838
Bo01039s010 Brassica oleracea Bo01039s010 N 0.838
Bra018675 Brassica rapa Bra018675 N 0.838
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.838
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.838
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.838
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.838
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.838
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.838
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.838
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.838
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.830
Bo4g165420 Brassica oleracea Bo4g165420 N 0.828
Ca_02507 Cicer arietinum Ca_02507 N 0.828
Bra011942 Brassica rapa Bra011942 N 0.828
Bra035698 Brassica rapa Bra035698 N 0.828
OBART05G01640 Oryza barthii OBART05G01640 N 0.827
OMERI05G01740 Oryza meridionalis OMERI05G01740 N 0.824
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.824
PGSC0003DMG400027372 Solanum tuberosum PGSC0003DMG400027372 I 0.821
Bo8g112780 Brassica oleracea Bo8g112780 N 0.818
Cla005133 Citrullus lanatus Cla005133 N 0.818
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.818
Si024430m.g Setaria italica Si024430m.g N 0.818
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.818
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.818
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.818
Bo3g040220 Brassica oleracea Bo3g040220 N 0.818
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.818
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.818
PDK_20s1595351g001 Phoenix dactylifera PDK_20s1595351g001 N 0.808
Bra031599 Brassica rapa Bra031599 N 0.808
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.808
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.808
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.808
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.808
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.808
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.808
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.808
OS05G0123000 Oryza sativa OS05G0123000 I 0.807
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.807
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.807
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.800
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.798
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.798
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.798
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.798
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.798
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.798
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.798
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.798
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.798
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.798
OBART03G13260 Oryza barthii OBART03G13260 N 0.798
OS03G0287400 Oryza sativa OS03G0287400 N 0.798
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.798
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.788
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.787
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N 0.782
OPUNC05G01600 Oryza punctata OPUNC05G01600 N 0.780
Si037280m.g Setaria italica Si037280m.g N 0.778
OB03G23270 Oryza brachyantha OB03G23270 N 0.778
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.778
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.778
F775_02335 Aegilops tauschii F775_02335 N 0.778
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.778
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.778
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.768
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.768
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.768
Cucsa.275710 Cucumis sativus Cucsa.275710 N 0.768
OMERI05G01730 Oryza meridionalis OMERI05G01730 N 0.767
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.758
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.758
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.758
Cucsa.358620 Cucumis sativus Cucsa.358620 N 0.750
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.750
MDP0000183071 Malus domestica MDP0000183071 N 0.739
evm.TU.contig_40341.2 Carica papaya evm.TU.contig_40341.2 N 0.739
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.737
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.737
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.737
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.737
PK09808.1 Cannabis sativa PK09808.1 I 0.732
GSMUA_Achr9G04330_001 Musa acuminata GSMUA_Achr9G04330_001 N 0.727
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.727
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.717
mgf026046m Mimulus guttatus mgf026046m I 0.717
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.717
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.717
Sb05g000550 Sorghum bicolor Sb05g000550 I 0.709
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.707
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.707
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.707
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.707
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.707
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.707
LBD4 Arabidopsis thaliana AT1G31320 D 0.707
OGLUM05G01700 Oryza glumaepatula OGLUM05G01700 N 0.707
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
PK11564.1 Cannabis sativa PK11564.1 I 0.707
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.707
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.707
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.707
Si026864m.g Setaria italica Si026864m.g I 0.707
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.707
MDP0000268890 Malus domestica MDP0000268890 I 0.707
MDP0000284409 Malus domestica MDP0000284409 I 0.707
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.707
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.707
mgf018189m Mimulus guttatus mgf018189m I 0.707
MDP0000121203 Malus domestica MDP0000121203 I 0.707
mgf022958m Mimulus guttatus mgf022958m I 0.707
30169.m006340 Ricinus communis 30169.m006340 I 0.707
TCM_032557 Theobroma cacao TCM_032557 I 0.707
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.707
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.707
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.707
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.707
Pm011040 Prunus mume Pm011040 I 0.707
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.707
Cla013678 Citrullus lanatus Cla013678 I 0.707
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.702