CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sb05g000550
(
Sorghum bicolor
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
Sb05g000550
T245975_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.800
0.800
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.764
0.764
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb05g000550.1
LOB
1
55
MLQELPAQQRADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQLQVQLALAKA
Links
Other
LOB
family TFs
Other
Sorghum bicolor
TFs
147 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si026864m.g
Setaria italica
Si026864m.g
I
0.982
Si011647m.g
Setaria italica
Si011647m.g
I
0.982
F775_08326
Aegilops tauschii
F775_08326
I
0.909
GRMZM2G025989
Zea mays
GRMZM2G025989
I
0.909
Traes_5BL_CE4CF3B5C
Triticum aestivum
Traes_5BL_CE4CF3B5C
I
0.909
mgf018189m
Mimulus guttatus
mgf018189m
I
0.891
TCM_042447
Theobroma cacao
TCM_042447
I
0.891
PK09808.1
Cannabis sativa
PK09808.1
I
0.891
Sb09g016240
Sorghum bicolor
Sb09g016240
I
0.873
POPTR_0008s07280
Populus trichocarpa
POPTR_0008s07280
I
0.873
GRMZM2G044150
Zea mays
GRMZM2G044150
I
0.873
POPTR_0010s19180
Populus trichocarpa
POPTR_0010s19180
I
0.873
SapurV1A.0673s0190
Salix purpurea
SapurV1A.0673s0190
I
0.873
Ciclev10029962m.g
Citrus clementina
Ciclev10029962m.g
I
0.873
Gorai.011G290800
Gossypium raimondii
Gorai.011G290800
I
0.873
SapurV1A.0061s0670
Salix purpurea
SapurV1A.0061s0670
I
0.873
Gorai.003G149600
Gossypium raimondii
Gorai.003G149600
I
0.873
Si024229m.g
Setaria italica
Si024229m.g
I
0.873
VIT_13s0067g01880
Vitis vinifera
VIT_13s0067g01880
I
0.873
evm.TU.supercontig_2.374
Carica papaya
evm.TU.supercontig_2.374
I
0.855
GLYMA11G29450
Glycine max
GLYMA11G29450
I
0.855
Lus10031285.g
Linum usitatissimum
Lus10031285.g
I
0.855
orange1.1g036782m.g
Citrus sinensis
orange1.1g036782m.g
I
0.855
TCM_042212
Theobroma cacao
TCM_042212
I
0.855
Ciclev10032929m.g
Citrus clementina
Ciclev10032929m.g
I
0.855
BRADI4G44850
Brachypodium distachyon
BRADI4G44850
I
0.855
MTR_3g071590
Medicago truncatula
MTR_3g071590
I
0.855
PDK_20s1810211g001
Phoenix dactylifera
PDK_20s1810211g001
I
0.855
Ca_13388
Cicer arietinum
Ca_13388
I
0.836
MDP0000265429
Malus domestica
MDP0000265429
I
0.836
PGSC0003DMG400023939
Solanum tuberosum
PGSC0003DMG400023939
I
0.836
MTR_5g083230
Medicago truncatula
MTR_5g083230
I
0.836
Thhalv10017267m.g
Eutrema salsugineum
Thhalv10017267m.g
I
0.836
Cla009336
Citrullus lanatus
Cla009336
I
0.818
GLYMA08G17990
Glycine max
GLYMA08G17990
I
0.818
orange1.1g038565m.g
Citrus sinensis
orange1.1g038565m.g
I
0.818
Eucgr.B03991
Eucalyptus grandis
Eucgr.B03991
I
0.818
gene21039-v1.0-hybrid
Fragaria vesca
gene21039-v1.0-hybrid
I
0.818
GLYMA18G02780
Glycine max
GLYMA18G02780
I
0.818
GSMUA_Achr5G29470_001
Musa acuminata
GSMUA_Achr5G29470_001
I
0.818
SapurV1A.0042s0120
Salix purpurea
SapurV1A.0042s0120
I
0.818
SapurV1A.0059s0540
Salix purpurea
SapurV1A.0059s0540
I
0.818
Thhalv10008917m.g
Eutrema salsugineum
Thhalv10008917m.g
I
0.800
LBD4
Arabidopsis thaliana
AT1G31320
D
0.800
OS11G0106900
Oryza sativa
OS11G0106900
I
0.800
gene20083-v1.0-hybrid
Fragaria vesca
gene20083-v1.0-hybrid
I
0.800
ORGLA11G0005800
Oryza glaberrima
ORGLA11G0005800
I
0.800
orange1.1g044340m.g
Citrus sinensis
orange1.1g044340m.g
I
0.800
LBD4
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002773
I
0.800
BGIOSGA036857
Oryza indica
BGIOSGA036857
I
0.800
Carubv10010462m.g
Capsella rubella
Carubv10010462m.g
I
0.800
Cagra.1508s0061
Capsella grandiflora
Cagra.1508s0061
I
0.800
Ciclev10006113m.g
Citrus clementina
Ciclev10006113m.g
I
0.800
ORUFI11G00360
Oryza rufipogon
ORUFI11G00360
N
0.800
PK24688.1
Cannabis sativa
PK24688.1
I
0.800
LBD4
Vitis vinifera
VIT_00s0125g00290
I
0.800
mgf022958m
Mimulus guttatus
mgf022958m
I
0.800
Gorai.002G104500
Gossypium raimondii
Gorai.002G104500
I
0.800
Pavir.Ib04170
Panicum virgatum
Pavir.Ib04170
I
0.800
MDP0000121203
Malus domestica
MDP0000121203
I
0.800
Pavir.Ia01095
Panicum virgatum
Pavir.Ia01095
I
0.800
Cucsa.118370
Cucumis sativus
Cucsa.118370
I
0.800
OS12G0106200
Oryza sativa
OS12G0106200
I
0.800
Pm010668
Prunus mume
Pm010668
I
0.800
cassava27818.m1
Manihot esculenta
cassava27818.m1
I
0.800
BGIOSGA034653
Oryza indica
BGIOSGA034653
I
0.800
PRUPE_ppa012322mg
Prunus persica
PRUPE_ppa012322mg
I
0.800
Sb01g012810
Sorghum bicolor
Sb01g012810
I
0.800
Cla013678
Citrullus lanatus
Cla013678
I
0.800
Lus10018275.g
Linum usitatissimum
Lus10018275.g
I
0.800
Lus10017431.g
Linum usitatissimum
Lus10017431.g
I
0.800
LjSGA_062507.1.1
Lotus japonicus
LjSGA_062507.1.1
I
0.793
OBART02G29970
Oryza barthii
OBART02G29970
N
0.788
mgf026046m
Mimulus guttatus
mgf026046m
I
0.782
Bo7g041000
Brassica oleracea
Bo7g041000
I
0.782
Cucsa.239660
Cucumis sativus
Cucsa.239660
I
0.782
BGIOSGA013249
Oryza indica
BGIOSGA013249
I
0.782
MDP0000268890
Malus domestica
MDP0000268890
I
0.782
MDP0000284409
Malus domestica
MDP0000284409
I
0.782
orange1.1g031034m.g
Citrus sinensis
orange1.1g031034m.g
I
0.782
SapurV1A.0023s0430
Salix purpurea
SapurV1A.0023s0430
I
0.782
Gorai.010G170700
Gossypium raimondii
Gorai.010G170700
I
0.782
Ciclev10016993m.g
Citrus clementina
Ciclev10016993m.g
I
0.782
SapurV1A.0038s0110
Salix purpurea
SapurV1A.0038s0110
I
0.782
Aquca_118_00035
Aquilegia coerulea
Aquca_118_00035
I
0.782
Pm011040
Prunus mume
Pm011040
I
0.782
PRUPE_ppa012253mg
Prunus persica
PRUPE_ppa012253mg
I
0.782
GLYMA15G13410
Glycine max
GLYMA15G13410
I
0.782
Solyc11g045530.1
Solanum lycopersicum
Solyc11g045530.1
I
0.782
GLYMA15G41020
Glycine max
GLYMA15G41020
I
0.782
ORUFI03G29410
Oryza rufipogon
ORUFI03G29410
I
0.782
OGLUM04G05130
Oryza glumaepatula
OGLUM04G05130
I
0.782
OMERI03G24920
Oryza meridionalis
OMERI03G24920
I
0.782
ONIVA03G29300
Oryza nivara
ONIVA03G29300
I
0.782
LBD3
Vitis vinifera
VIT_19s0027g01120
I
0.782
POPTR_0010s22470
Populus trichocarpa
POPTR_0010s22470
I
0.782
30169.m006340
Ricinus communis
30169.m006340
I
0.782
LjSGA_079580.1.1
Lotus japonicus
LjSGA_079580.1.1
I
0.769
POPTR_0005s10050
Populus trichocarpa
POPTR_0005s10050
I
0.769
Lus10031769.g
Linum usitatissimum
Lus10031769.g
I
0.764
Ca_04287
Cicer arietinum
Ca_04287
I
0.764
POPTR_0008s04350
Populus trichocarpa
POPTR_0008s04350
I
0.764
GSMUA_Achr8G02800_001
Musa acuminata
GSMUA_Achr8G02800_001
I
0.764
GLYMA20G02850
Glycine max
GLYMA20G02850
I
0.764
POPTR_0007s08290
Populus trichocarpa
POPTR_0007s08290
I
0.764
Solyc06g005090.2
Solanum lycopersicum
Solyc06g005090.2
I
0.764
ORGLA02G0255200
Oryza glaberrima
ORGLA02G0255200
N
0.764
MTR_1g095850
Medicago truncatula
MTR_1g095850
I
0.764
PGSC0003DMG400025400
Solanum tuberosum
PGSC0003DMG400025400
I
0.764
MTR_4g083680
Medicago truncatula
MTR_4g083680
I
0.764
PGSC0003DMG400021204
Solanum tuberosum
PGSC0003DMG400021204
I
0.745
PGSC0003DMG400025384
Solanum tuberosum
PGSC0003DMG400025384
N
0.745
cassava40961.m1
Manihot esculenta
cassava40961.m1
I
0.745
GRMZM2G447176
Zea mays
GRMZM2G447176
I
0.745
SELMODRAFT_49085
Selaginella moellendorffii
SELMODRAFT_49085
I
0.745
GLYMA07G35000
Glycine max
GLYMA07G35000
I
0.745
VIT_13s0019g03700
Vitis vinifera
VIT_13s0019g03700
I
0.745
VIT_06s0004g03350
Vitis vinifera
VIT_06s0004g03350
I
0.745
AMTR_s00032p00142260
Amborella trichopoda
AMTR_s00032p00142260
I
0.745
Cucsa.166030
Cucumis sativus
Cucsa.166030
N
0.727
Cucsa.052720
Cucumis sativus
Cucsa.052720
I
0.727
cassava11218.m1
Manihot esculenta
cassava11218.m1
I
0.727
cassava819.valid.m1
Manihot esculenta
cassava819.valid.m1
I
0.727
Traes_4AL_AD9C8CB77
Triticum aestivum
Traes_4AL_AD9C8CB77
I
0.727
OB03G35930
Oryza brachyantha
OB03G35930
N
0.727
Cla000556
Citrullus lanatus
Cla000556
I
0.727
Gorai.004G012800
Gossypium raimondii
Gorai.004G012800
I
0.727
Lus10011645.g
Linum usitatissimum
Lus10011645.g
I
0.727
Gorai.006G120900
Gossypium raimondii
Gorai.006G120900
I
0.727
PRUPE_ppa011528mg
Prunus persica
PRUPE_ppa011528mg
I
0.727
Cla013598
Citrullus lanatus
Cla013598
I
0.727
Solyc02g069440.2
Solanum lycopersicum
Solyc02g069440.2
I
0.727
gene23226-v1.0-hybrid
Fragaria vesca
gene23226-v1.0-hybrid
N
0.727
Lus10036130.g
Linum usitatissimum
Lus10036130.g
I
0.727
OLONG_023571
Oryza longistaminata
OLONG_023571
I
0.719
BGIOSGA016336
Oryza indica
BGIOSGA016336
N
0.709
OBART04G11480
Oryza barthii
OBART04G11480
N
0.709
Lus10040373.g
Linum usitatissimum
Lus10040373.g
I
0.709
MDP0000123013
Malus domestica
MDP0000123013
I
0.709
Gorai.012G094200
Gossypium raimondii
Gorai.012G094200
N
0.709
Carubv10010390m.g
Capsella rubella
Carubv10010390m.g
N
0.709
OMERI03G13500
Oryza meridionalis
OMERI03G13500
N
0.709
MDP0000151784
Malus domestica
MDP0000151784
I
0.709
ONIVA04G09470
Oryza nivara
ONIVA04G09470
N
0.709
BGIOSGA018905
Oryza indica
BGIOSGA018905
I
0.702
ORUFI05G01750
Oryza rufipogon
ORUFI05G01750
I
0.702
OS05G0123000
Oryza sativa
OS05G0123000
I
0.702