ORGLA11G0005800 (Oryza glaberrima)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 ORGLA11G0005800 T245738_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.737 0.737
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA11G0005800.1 LOB 11 109

Links

Other LOB family TFs
Other Oryza glaberrima TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA036857 Oryza indica BGIOSGA036857 I 1.000
OS11G0106900 Oryza sativa OS11G0106900 I 1.000
BGIOSGA034653 Oryza indica BGIOSGA034653 I 1.000
OS12G0106200 Oryza sativa OS12G0106200 I 1.000
ORGLA12G0001500 Oryza glaberrima ORGLA12G0001500 I 0.980
OGLUM12G00350 Oryza glumaepatula OGLUM12G00350 I 0.980
OPUNC12G00430 Oryza punctata OPUNC12G00430 I 0.960
ORUFI11G00360 Oryza rufipogon ORUFI11G00360 N 0.939
LPERR11G00440 Leersia perrieri LPERR11G00440 I 0.939
OB11G10200 Oryza brachyantha OB11G10200 I 0.929
OB12G10480 Oryza brachyantha OB12G10480 I 0.929
LPERR12G00030 Leersia perrieri LPERR12G00030 I 0.909
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.830
Si026864m.g Setaria italica Si026864m.g I 0.828
PK09808.1 Cannabis sativa PK09808.1 I 0.821
GSMUA_Achr10G14880_001 Musa acuminata GSMUA_Achr10G14880_001 I 0.818
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.818
GSMUA_Achr10G13050_001 Musa acuminata GSMUA_Achr10G13050_001 I 0.818
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.808
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.808
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.808
Sb05g000550 Sorghum bicolor Sb05g000550 I 0.800
GSMUA_Achr6G15660_001 Musa acuminata GSMUA_Achr6G15660_001 I 0.798
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.798
MLOC_54949 Hordeum vulgare MLOC_54949 I 0.798
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.798
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.798
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.798
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.798
OS05G0346800 Oryza sativa OS05G0346800 I 0.798
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I 0.798
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I 0.798
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.798
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.798
Si024229m.g Setaria italica Si024229m.g I 0.798
OB05G20740 Oryza brachyantha OB05G20740 I 0.798
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.798
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.798
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.798
orange1.1g038565m.g Citrus sinensis orange1.1g038565m.g I 0.796
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.788
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.788
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.788
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.788
Ca_12450 Cicer arietinum Ca_12450 I 0.788
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.788
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.788
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.788
OBART05G12620 Oryza barthii OBART05G12620 I 0.788
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.788
F775_08326 Aegilops tauschii F775_08326 I 0.788
Sb08g000575 Sorghum bicolor Sb08g000575 I 0.787
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.787
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.778
Pm018982 Prunus mume Pm018982 I 0.778
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.778
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.778
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.778
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.778
MDP0000265429 Malus domestica MDP0000265429 I 0.778
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.778
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.778
PDK_20s1728161g001 Phoenix dactylifera PDK_20s1728161g001 I 0.778
mgf018189m Mimulus guttatus mgf018189m I 0.778
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.778
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.778
ORGLA04G0085000 Oryza glaberrima ORGLA04G0085000 N 0.774
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.768
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.768
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.768
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.768
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.768
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.768
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.768
29729.m002278 Ricinus communis 29729.m002278 I 0.768
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.768
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.768
Ca_13388 Cicer arietinum Ca_13388 I 0.768
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.768
TCM_042447 Theobroma cacao TCM_042447 I 0.768
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.768
Pm000193 Prunus mume Pm000193 I 0.768
OS03G0659700 Oryza sativa OS03G0659700 I 0.766
PK17019.1 Cannabis sativa PK17019.1 I 0.765
LjSGA_062507.1.1 Lotus japonicus LjSGA_062507.1.1 I 0.759
MDP0000155138 Malus domestica MDP0000155138 I 0.758
Ca_08998 Cicer arietinum Ca_08998 I 0.758
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.758
Eucgr.G03089 Eucalyptus grandis Eucgr.G03089 I 0.758
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.758
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.758
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.758
Gorai.004G234100 Gossypium raimondii Gorai.004G234100 I 0.758
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.758
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.758
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.758
Si011647m.g Setaria italica Si011647m.g I 0.758
PDK_20s1342451g001 Phoenix dactylifera PDK_20s1342451g001 I 0.758
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.758
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.758
MDP0000861160 Malus domestica MDP0000861160 I 0.758
TRIUR3_27421 Triticum urartu TRIUR3_27421 I 0.750
OBART02G29970 Oryza barthii OBART02G29970 N 0.750
F775_24149 Aegilops tauschii F775_24149 I 0.750
MDP0000194766 Malus domestica MDP0000194766 I 0.747
GLYMA18G06530 Glycine max GLYMA18G06530 I 0.747
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.747
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.747
Bo4g059700 Brassica oleracea Bo4g059700 I 0.747
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.747
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.747
Cla007354 Citrullus lanatus Cla007354 I 0.747
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.747
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.747
GSMUA_Achr9G18030_001 Musa acuminata GSMUA_Achr9G18030_001 I 0.747
cassava2872.m1 Manihot esculenta cassava2872.m1 I 0.747
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.747
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.747
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.747
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.747
Bo4g170770 Brassica oleracea Bo4g170770 I 0.747
TCM_032557 Theobroma cacao TCM_032557 I 0.747
TCM_042212 Theobroma cacao TCM_042212 I 0.747
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.747
Lus10007525.g Linum usitatissimum Lus10007525.g I 0.747
Lus10017431.g Linum usitatissimum Lus10017431.g I 0.747
Solyc06g050950.2 Solanum lycopersicum Solyc06g050950.2 I 0.747
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.747
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.747
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.747
Bra018335 Brassica rapa Bra018335 I 0.747
mgf019461m Mimulus guttatus mgf019461m I 0.747
LBD12 Arabidopsis thaliana AT2G30130 I 0.747
Bra021612 Brassica rapa Bra021612 I 0.747
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.747
PK21617.1 Cannabis sativa PK21617.1 I 0.739
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.737
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.737
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.737
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.737
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.737
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.737
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.737
Bra014907 Brassica rapa Bra014907 I 0.737
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.737
Bra022780 Brassica rapa Bra022780 I 0.737
MDP0000121203 Malus domestica MDP0000121203 I 0.737
Bo3g024350 Brassica oleracea Bo3g024350 I 0.737
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.737
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.737
SapurV1A.0566s0080 Salix purpurea SapurV1A.0566s0080 I 0.737
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.737
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.737
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.737
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.737
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.737
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.737
Cla009336 Citrullus lanatus Cla009336 I 0.737
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.737
LBD4 Arabidopsis thaliana AT1G31320 D 0.737
TCM_029315 Theobroma cacao TCM_029315 I 0.737
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.737
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.737
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.737
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.737
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.737
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.737
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.737
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.737
GSMUA_Achr3G10050_001 Musa acuminata GSMUA_Achr3G10050_001 I 0.737
ORUFI01G46340 Oryza rufipogon ORUFI01G46340 I 0.733
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.727
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.727
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.727
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.727
MDP0000268890 Malus domestica MDP0000268890 I 0.727
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.727
PK24688.1 Cannabis sativa PK24688.1 I 0.727
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.727
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.727
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.727
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.727
Bo7g041000 Brassica oleracea Bo7g041000 I 0.727
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.727
MDP0000284409 Malus domestica MDP0000284409 I 0.727
Si037583m.g Setaria italica Si037583m.g I 0.727
Ca_13575 Cicer arietinum Ca_13575 I 0.727
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.727
30169.m006340 Ricinus communis 30169.m006340 I 0.727
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.727
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.727
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.727
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.727
Pm011040 Prunus mume Pm011040 I 0.727
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.727
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.727
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.727
Ca_06548 Cicer arietinum Ca_06548 I 0.727
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.717
MTR_3g031660 Medicago truncatula MTR_3g031660 I 0.717
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.717
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.717
mgf026046m Mimulus guttatus mgf026046m I 0.717
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.717
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.717
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.717
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.717
Cla013598 Citrullus lanatus Cla013598 I 0.717
PK11564.1 Cannabis sativa PK11564.1 I 0.717
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.717
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.717
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.717
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.717
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.717
Cla013678 Citrullus lanatus Cla013678 I 0.717
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.717
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.717
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.717
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.717
OMERI01G39870 Oryza meridionalis OMERI01G39870 I 0.707
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.707
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.707
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.707
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.707
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.707
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.707
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.707
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.707
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.707
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.707
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.707
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.707
Thhalv10017267m.g Eutrema salsugineum Thhalv10017267m.g I 0.702