Bra005949 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra005949 T267766_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.737 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra005949.1-P Myb 14 61
Bra005949.1-P Myb 67 112

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g004500 Brassica oleracea Bo3g004500 I 0.879
Bostr.13129s0197 Boechera stricta Bostr.13129s0197 I 0.877
Carubv10001328m.g Capsella rubella Carubv10001328m.g I 0.877
Cagra.2925s0017 Capsella grandiflora Cagra.2925s0017 I 0.877
MYB29 Arabidopsis thaliana AT5G07690 I 0.877
Thhalv10013952m.g Eutrema salsugineum Thhalv10013952m.g I 0.877
Bo9g175680 Brassica oleracea Bo9g175680 I 0.867
MYB29 Arabidopsis lyrata fgenesh2_kg.6__738__AT5G07690.1 I 0.862
Bo9g014610 Brassica oleracea Bo9g014610 I 0.843
Thhalv10004407m.g Eutrema salsugineum Thhalv10004407m.g I 0.843
Bra035929 Brassica rapa Bra035929 I 0.843
MYB76 Arabidopsis lyrata Al_scaffold_0006_698 I 0.839
Bra012961 Brassica rapa Bra012961 I 0.833
Bo7g098590 Brassica oleracea Bo7g098590 I 0.833
Bo2g161590 Brassica oleracea Bo2g161590 I 0.830
MYB76 Arabidopsis thaliana AT5G07700 I 0.822
cassava44039.valid.m1 Manihot esculenta cassava44039.valid.m1 I 0.821
cassava46146.m1 Manihot esculenta cassava46146.m1 I 0.814
MYB28 Arabidopsis lyrata scaffold_802785.1 I 0.813
MYB28 Arabidopsis thaliana AT5G61420 I 0.813
Bostr.26833s0098 Boechera stricta Bostr.26833s0098 I 0.813
Carubv10027861m.g Capsella rubella Carubv10027861m.g I 0.813
Cagra.0542s0036 Capsella grandiflora Cagra.0542s0036 I 0.813
Lus10019085.g Linum usitatissimum Lus10019085.g I 0.806
Bra029311 Brassica rapa Bra029311 I 0.789
cassava47112.m1 Manihot esculenta cassava47112.m1 I 0.783
cassava46145.m1 Manihot esculenta cassava46145.m1 I 0.769
evm.TU.supercontig_3.239 Carica papaya evm.TU.supercontig_3.239 I 0.746
Bostr.13129s0196 Boechera stricta Bostr.13129s0196 I 0.741
Bra025666 Brassica rapa Bra025666 I 0.740
Thhalv10008152m.g Eutrema salsugineum Thhalv10008152m.g I 0.740
Bo5g025570 Brassica oleracea Bo5g025570 I 0.740
Carubv10009563m.g Capsella rubella Carubv10009563m.g I 0.737
MYB51 Arabidopsis thaliana AT1G18570 D 0.737
Cagra.4153s0023 Capsella grandiflora Cagra.4153s0023 I 0.737
Bostr.7128s0464 Boechera stricta Bostr.7128s0464 I 0.737
MYB51 Arabidopsis lyrata fgenesh2_kg.1__2031__AT1G18570.1 I 0.737
Bra015939 Brassica rapa Bra015939 I 0.727
Bo6g118350 Brassica oleracea Bo6g118350 I 0.727
ATMYB122 Arabidopsis lyrata fgenesh2_kg.2__1680__AT1G74080.1 I 0.727
Carubv10027524m.g Capsella rubella Carubv10027524m.g I 0.723
MYB34 Arabidopsis thaliana AT5G60890 I 0.723
Bostr.26833s0149 Boechera stricta Bostr.26833s0149 I 0.723
Bra013000 Brassica rapa Bra013000 I 0.723
ATMYB34 Arabidopsis lyrata fgenesh2_kg.8__2056__AT5G60890.1 I 0.723
Thhalv10004638m.g Eutrema salsugineum Thhalv10004638m.g I 0.723
MYB122 Arabidopsis thaliana AT1G74080 I 0.722
Bo2g080900 Brassica oleracea Bo2g080900 I 0.721
Bo7g098110 Brassica oleracea Bo7g098110 I 0.720
Bo8g104300 Brassica oleracea Bo8g104300 I 0.719
Bra031035 Brassica rapa Bra031035 I 0.719
Bo8g067910 Brassica oleracea Bo8g067910 I 0.717
Bra016553 Brassica rapa Bra016553 I 0.717
Bra035954 Brassica rapa Bra035954 I 0.712
Bo9g014380 Brassica oleracea Bo9g014380 I 0.712
Bra008131 Brassica rapa Bra008131 I 0.711
PK27708.1 Cannabis sativa PK27708.1 I 0.710
PK14811.1 Cannabis sativa PK14811.1 I 0.708
Thhalv10018705m.g Eutrema salsugineum Thhalv10018705m.g I 0.707
Bo2g161180 Brassica oleracea Bo2g161180 I 0.703
Bra029349 Brassica rapa Bra029349 I 0.703
TCM_014091 Theobroma cacao TCM_014091 I 0.697
Gorai.003G097900 Gossypium raimondii Gorai.003G097900 I 0.693
PK01174.1 Cannabis sativa PK01174.1 I 0.693
Bra029350 Brassica rapa Bra029350 I 0.677
gene12738-v1.0-hybrid Fragaria vesca gene12738-v1.0-hybrid I 0.674
Carubv10020723m.g Capsella rubella Carubv10020723m.g I 0.671
POPTR_0014s11780 Populus trichocarpa POPTR_0014s11780 I 0.670
evm.TU.supercontig_28.71 Carica papaya evm.TU.supercontig_28.71 I 0.669
SapurV1A.0180s0510 Salix purpurea SapurV1A.0180s0510 I 0.667
cassava24756.valid.m1 Manihot esculenta cassava24756.valid.m1 I 0.667
Lus10028435.g Linum usitatissimum Lus10028435.g I 0.666
Lus10041888.g Linum usitatissimum Lus10041888.g I 0.666
MTR_2g034790 Medicago truncatula MTR_2g034790 I 0.661