PK27708.1 (Cannabis sativa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 PK27708.1 T290486_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.713 0.753
AtMYB41
M07109_2.00 		Arabidopsis thaliana
DHDBBYYACCTAMYW
WRKTAGGTRRVVHDH		 Dap-seq
OMalley et al.(2016)
MYB41_col_a 		0.664 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK27708.1 Myb 35 82
PK27708.1 Myb 88 144

Links

Other Myb/SANT family TFs
Other Cannabis sativa TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK14811.1 Cannabis sativa PK14811.1 I 0.806
Cagra.0542s0036 Capsella grandiflora Cagra.0542s0036 I 0.749
Bostr.26833s0098 Boechera stricta Bostr.26833s0098 I 0.749
Bra035929 Brassica rapa Bra035929 I 0.749
MYB28 Arabidopsis thaliana AT5G61420 I 0.749
Thhalv10004407m.g Eutrema salsugineum Thhalv10004407m.g I 0.749
Bo9g014610 Brassica oleracea Bo9g014610 I 0.749
Carubv10027861m.g Capsella rubella Carubv10027861m.g I 0.749
MYB28 Arabidopsis lyrata scaffold_802785.1 I 0.749
MYB76 Arabidopsis thaliana AT5G07700 I 0.743
Bo7g098590 Brassica oleracea Bo7g098590 I 0.739
Bra012961 Brassica rapa Bra012961 I 0.739
Cagra.2925s0017 Capsella grandiflora Cagra.2925s0017 I 0.738
Carubv10001328m.g Capsella rubella Carubv10001328m.g I 0.738
PK01174.1 Cannabis sativa PK01174.1 I 0.734
Bo9g014380 Brassica oleracea Bo9g014380 I 0.732
Bo2g161590 Brassica oleracea Bo2g161590 I 0.732
cassava44039.valid.m1 Manihot esculenta cassava44039.valid.m1 I 0.730
Bo9g175680 Brassica oleracea Bo9g175680 I 0.728
MYB76 Arabidopsis lyrata Al_scaffold_0006_698 I 0.726
Bra029311 Brassica rapa Bra029311 I 0.725
Bra035954 Brassica rapa Bra035954 I 0.723
cassava47112.m1 Manihot esculenta cassava47112.m1 I 0.722
Lus10019085.g Linum usitatissimum Lus10019085.g I 0.722
cassava46146.m1 Manihot esculenta cassava46146.m1 I 0.722
ATMYB34 Arabidopsis lyrata fgenesh2_kg.8__2056__AT5G60890.1 I 0.721
Carubv10027524m.g Capsella rubella Carubv10027524m.g I 0.721
Bra013000 Brassica rapa Bra013000 I 0.721
Bo7g098110 Brassica oleracea Bo7g098110 I 0.721
Bostr.13129s0197 Boechera stricta Bostr.13129s0197 I 0.721
Thhalv10013952m.g Eutrema salsugineum Thhalv10013952m.g I 0.721
MYB34 Arabidopsis thaliana AT5G60890 I 0.721
MYB29 Arabidopsis thaliana AT5G07690 I 0.721
Thhalv10004638m.g Eutrema salsugineum Thhalv10004638m.g I 0.721
Bostr.26833s0149 Boechera stricta Bostr.26833s0149 I 0.721
Cagra.4153s0023 Capsella grandiflora Cagra.4153s0023 I 0.713
Bostr.7128s0464 Boechera stricta Bostr.7128s0464 I 0.713
MYB51 Arabidopsis lyrata fgenesh2_kg.1__2031__AT1G18570.1 I 0.713
Carubv10009563m.g Capsella rubella Carubv10009563m.g I 0.713
Bra025666 Brassica rapa Bra025666 I 0.713
Thhalv10008152m.g Eutrema salsugineum Thhalv10008152m.g I 0.713
Bo5g025570 Brassica oleracea Bo5g025570 I 0.713
MYB51 Arabidopsis thaliana AT1G18570 D 0.713
evm.TU.supercontig_3.239 Carica papaya evm.TU.supercontig_3.239 I 0.712
ATMYB122 Arabidopsis lyrata fgenesh2_kg.2__1680__AT1G74080.1 I 0.711
Bo6g118350 Brassica oleracea Bo6g118350 I 0.711
Bra015939 Brassica rapa Bra015939 I 0.711
Bra005949 Brassica rapa Bra005949 I 0.710
Bo3g004500 Brassica oleracea Bo3g004500 I 0.709
Bo8g067910 Brassica oleracea Bo8g067910 I 0.708
Bra016553 Brassica rapa Bra016553 I 0.708
Bra031035 Brassica rapa Bra031035 I 0.706
MYB122 Arabidopsis thaliana AT1G74080 I 0.706
Bo8g104300 Brassica oleracea Bo8g104300 I 0.706
MYB29 Arabidopsis lyrata fgenesh2_kg.6__738__AT5G07690.1 I 0.705
Bo2g080900 Brassica oleracea Bo2g080900 I 0.702
Bo2g161180 Brassica oleracea Bo2g161180 I 0.701
Gorai.003G097900 Gossypium raimondii Gorai.003G097900 I 0.701
TCM_014091 Theobroma cacao TCM_014091 I 0.698
Bra008131 Brassica rapa Bra008131 I 0.692
Thhalv10018705m.g Eutrema salsugineum Thhalv10018705m.g I 0.691
Bra029350 Brassica rapa Bra029350 I 0.689
gene12738-v1.0-hybrid Fragaria vesca gene12738-v1.0-hybrid I 0.685
Carubv10020723m.g Capsella rubella Carubv10020723m.g I 0.685
Lus10028435.g Linum usitatissimum Lus10028435.g I 0.681
Lus10041888.g Linum usitatissimum Lus10041888.g I 0.681
cassava46145.m1 Manihot esculenta cassava46145.m1 I 0.678
Bra029349 Brassica rapa Bra029349 I 0.677
GSMUA_AchrUn_randomG28780_001 Musa acuminata GSMUA_AchrUn_randomG28780_001 I 0.677
ORUFI02G34560 Oryza rufipogon ORUFI02G34560 I 0.675
TRIUR3_03304 Triticum urartu TRIUR3_03304 I 0.675
Traes_7AS_B8E8A2F55 Triticum aestivum Traes_7AS_B8E8A2F55 I 0.675
ORGLA02G0284500 Oryza glaberrima ORGLA02G0284500 I 0.675
ONIVA02G35050 Oryza nivara ONIVA02G35050 I 0.675
OMERI02G31500 Oryza meridionalis OMERI02G31500 I 0.675
OGLUM02G33500 Oryza glumaepatula OGLUM02G33500 I 0.675
LPERR02G26970 Leersia perrieri LPERR02G26970 I 0.675
OBART02G32900 Oryza barthii OBART02G32900 I 0.675
OPUNC02G30360 Oryza punctata OPUNC02G30360 I 0.675
Bostr.13129s0196 Boechera stricta Bostr.13129s0196 I 0.672
Lus10016855.g Linum usitatissimum Lus10016855.g I 0.670
Bo2g161170 Brassica oleracea Bo2g161170 I 0.668
Traes_6BL_5A2DB8F78 Triticum aestivum Traes_6BL_5A2DB8F78 I 0.667
Traes_6DL_8BF29D46C Triticum aestivum Traes_6DL_8BF29D46C I 0.667
Traes_6DL_499F64524 Triticum aestivum Traes_6DL_499F64524 I 0.667
TRIUR3_03772 Triticum urartu TRIUR3_03772 I 0.667
F775_26732 Aegilops tauschii F775_26732 I 0.667
BRADI3G58770 Brachypodium distachyon BRADI3G58770 I 0.667
TRIUR3_23397 Triticum urartu TRIUR3_23397 I 0.667
GRMZM2G159547 Zea mays GRMZM2G159547 I 0.667
Traes_6BL_0D6CD031E Triticum aestivum Traes_6BL_0D6CD031E I 0.667
Sb04g027540 Sorghum bicolor Sb04g027540 I 0.667
Traes_6AL_52227091B Triticum aestivum Traes_6AL_52227091B I 0.667
Traes_6AL_2BA02CAA9 Triticum aestivum Traes_6AL_2BA02CAA9 I 0.667
MLOC_52134 Hordeum vulgare MLOC_52134 I 0.667
GSMUA_Achr11G07180_001 Musa acuminata GSMUA_Achr11G07180_001 I 0.666
OGLUM02G22040 Oryza glumaepatula OGLUM02G22040 I 0.665
OBART04G14990 Oryza barthii OBART04G14990 I 0.665
OB02G29290 Oryza brachyantha OB02G29290 I 0.665
OBART02G21860 Oryza barthii OBART02G21860 I 0.665
OB04G22310 Oryza brachyantha OB04G22310 I 0.665
GRMZM2G032655 Zea mays GRMZM2G032655 I 0.665
F775_26161 Aegilops tauschii F775_26161 I 0.665
BGIOSGA016547 Oryza indica BGIOSGA016547 I 0.665
ORUFI04G16390 Oryza rufipogon ORUFI04G16390 I 0.665
ORUFI02G22940 Oryza rufipogon ORUFI02G22940 I 0.665
BGIOSGA008493 Oryza indica BGIOSGA008493 I 0.665
OMERI02G21400 Oryza meridionalis OMERI02G21400 I 0.665
ONIVA04G13130 Oryza nivara ONIVA04G13130 I 0.665
Si010352m.g Setaria italica Si010352m.g I 0.665
OS04G0461000 Oryza sativa OS04G0461000 I 0.665
Traes_2DL_C964675DE Triticum aestivum Traes_2DL_C964675DE I 0.665
BRADI5G12417 Brachypodium distachyon BRADI5G12417 I 0.665
ONIVA02G24090 Oryza nivara ONIVA02G24090 I 0.665
ORGLA04G0119800 Oryza glaberrima ORGLA04G0119800 I 0.665
TRIUR3_25784 Triticum urartu TRIUR3_25784 I 0.665
AtMYB41 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7001108 I 0.664
Bra024224 Brassica rapa Bra024224 I 0.664
Carubv10007810m.g Capsella rubella Carubv10007810m.g I 0.664
Bostr.7867s0646 Boechera stricta Bostr.7867s0646 I 0.664
Bo7g111870 Brassica oleracea Bo7g111870 I 0.664
Bo1g051220 Brassica oleracea Bo1g051220 I 0.664
AtMYB41 Arabidopsis thaliana AT4G28110 D 0.664
Thhalv10027463m.g Eutrema salsugineum Thhalv10027463m.g I 0.664
Cagra.1225s0085 Capsella grandiflora Cagra.1225s0085 I 0.664
Bra026281 Brassica rapa Bra026281 I 0.664
Gorai.009G236900 Gossypium raimondii Gorai.009G236900 I 0.663
evm.TU.supercontig_28.71 Carica papaya evm.TU.supercontig_28.71 I 0.663
cassava44382.m1 Manihot esculenta cassava44382.m1 I 0.663
TCM_034902 Theobroma cacao TCM_034902 I 0.663
VIT_16s0039g01710 Vitis vinifera VIT_16s0039g01710 I 0.663
Bo1g024170 Brassica oleracea Bo1g024170 I 0.662
MDP0000135594 Malus domestica MDP0000135594 I 0.662
Bra013526 Brassica rapa Bra013526 I 0.662
Aquca_038_00198 Aquilegia coerulea Aquca_038_00198 I 0.662
Cla007838 Citrullus lanatus Cla007838 I 0.662
Cla019747 Citrullus lanatus Cla019747 I 0.662
TCM_031294 Theobroma cacao TCM_031294 I 0.662
Solyc10g008700.1 Solanum lycopersicum Solyc10g008700.1 I 0.662
PGSC0003DMG400026628 Solanum tuberosum PGSC0003DMG400026628 I 0.662
Cucsa.126220 Cucumis sativus Cucsa.126220 I 0.662
Cucsa.148040 Cucumis sativus Cucsa.148040 I 0.662
Eucgr.F01069 Eucalyptus grandis Eucgr.F01069 I 0.662
evm.TU.supercontig_12.22 Carica papaya evm.TU.supercontig_12.22 I 0.662
GRMZM2G041415 Zea mays GRMZM2G041415 I 0.662
OPUNC06G07380 Oryza punctata OPUNC06G07380 I 0.662
Eucgr.C03554 Eucalyptus grandis Eucgr.C03554 I 0.661