Bra029113 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra029113 T268030_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.669 0.677
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029113.1-P Myb 14 61
Bra029113.1-P Myb 67 112

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g023140 Brassica oleracea Bo3g023140 I 0.909
AtMYB82 Arabidopsis lyrata Al_scaffold_0008_1642 I 0.860
Bo2g047590 Brassica oleracea Bo2g047590 I 0.858
Bra022602 Brassica rapa Bra022602 I 0.847
Thhalv10014754m.g Eutrema salsugineum Thhalv10014754m.g I 0.844
Eucgr.C01374 Eucalyptus grandis Eucgr.C01374 I 0.840
MYB82 Arabidopsis thaliana AT5G52600 I 0.839
Cagra.0084s0008 Capsella grandiflora Cagra.0084s0008 I 0.839
Carubv10028642m.g Capsella rubella Carubv10028642m.g I 0.839
Bostr.7305s0011 Boechera stricta Bostr.7305s0011 I 0.834
Gorai.001G044000 Gossypium raimondii Gorai.001G044000 I 0.819
evm.TU.supercontig_46.32 Carica papaya evm.TU.supercontig_46.32 I 0.810
TCM_038131 Theobroma cacao TCM_038131 I 0.808
Cla016951 Citrullus lanatus Cla016951 I 0.802
MDP0000264051 Malus domestica MDP0000264051 I 0.801
PK01088.1 Cannabis sativa PK01088.1 I 0.793
gene31098-v1.0-hybrid Fragaria vesca gene31098-v1.0-hybrid I 0.791
Pm027586 Prunus mume Pm027586 I 0.791
cassava32672.m1 Manihot esculenta cassava32672.m1 I 0.784
PRUPE_ppa016532mg Prunus persica PRUPE_ppa016532mg I 0.781
Cucsa.132300 Cucumis sativus Cucsa.132300 N 0.779
Gorai.004G276500 Gossypium raimondii Gorai.004G276500 N 0.778
Solyc07g008010.2 Solanum lycopersicum Solyc07g008010.2 I 0.776
PGSC0003DMG400030913 Solanum tuberosum PGSC0003DMG400030913 I 0.776
MDP0000167314 Malus domestica MDP0000167314 I 0.774
POPTR_0018s12780 Populus trichocarpa POPTR_0018s12780 N 0.768
POPTR_0006s06530 Populus trichocarpa POPTR_0006s06530 N 0.756
cassava29820.valid.m1 Manihot esculenta cassava29820.valid.m1 I 0.751
SapurV1A.2191s0020 Salix purpurea SapurV1A.2191s0020 N 0.745
SapurV1A.0197s0090 Salix purpurea SapurV1A.0197s0090 N 0.745
SapurV1A.0034s0330 Salix purpurea SapurV1A.0034s0330 N 0.743
mgf023205m Mimulus guttatus mgf023205m I 0.732
VIT_11s0016g05660 Vitis vinifera VIT_11s0016g05660 N 0.726
GLYMA10G35050 Glycine max GLYMA10G35050 I 0.717
SapurV1A.0710s0050 Salix purpurea SapurV1A.0710s0050 I 0.704
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I 0.703
GLYMA20G32510 Glycine max GLYMA20G32510 I 0.697
POPTR_0018s05530 Populus trichocarpa POPTR_0018s05530 I 0.692
Eucgr.K01504 Eucalyptus grandis Eucgr.K01504 I 0.689
PDK_20s1310471g002 Phoenix dactylifera PDK_20s1310471g002 I 0.687
Ca_01329 Cicer arietinum Ca_01329 I 0.683
SELMODRAFT_98669 Selaginella moellendorffii SELMODRAFT_98669 I 0.683
SELMODRAFT_127220 Selaginella moellendorffii SELMODRAFT_127220 I 0.683
Lus10039173.g Linum usitatissimum Lus10039173.g I 0.682
PDK_20s1918041g001 Phoenix dactylifera PDK_20s1918041g001 I 0.682
Bra039395 Brassica rapa Bra039395 I 0.679
VIT_11s0016g05690 Vitis vinifera VIT_11s0016g05690 N 0.679
GLYMA19G44660 Glycine max GLYMA19G44660 I 0.679
POPTR_0013s05310 Populus trichocarpa POPTR_0013s05310 I 0.678
chr1.CM0105.50.nd Lotus japonicus chr1.CM0105.50.nd I 0.678
LjSGA_023691.1 Lotus japonicus LjSGA_023691.1 I 0.678
SapurV1A.1276s0060 Salix purpurea SapurV1A.1276s0060 I 0.678
POPTR_0002s17460 Populus trichocarpa POPTR_0002s17460 I 0.676
Bo1g138250 Brassica oleracea Bo1g138250 I 0.676
TCM_037377 Theobroma cacao TCM_037377 I 0.676
SapurV1A.0003s0900 Salix purpurea SapurV1A.0003s0900 I 0.676
VIT_09s0002g01410 Vitis vinifera VIT_09s0002g01410 I 0.674
SapurV1A.0013s0160 Salix purpurea SapurV1A.0013s0160 I 0.673
POPTR_0014s09630 Populus trichocarpa POPTR_0014s09630 I 0.673
Eucgr.C03151 Eucalyptus grandis Eucgr.C03151 I 0.672
Aquca_009_00493 Aquilegia coerulea Aquca_009_00493 I 0.671
GLYMA20G32500 Glycine max GLYMA20G32500 I 0.669
Bra027423 Brassica rapa Bra027423 I 0.669
Q2TCH0_PETHY Petunia x hybrida Q2TCH0_PETHY D 0.669
Gorai.004G044000 Gossypium raimondii Gorai.004G044000 I 0.669
POPTR_0018s05750 Populus trichocarpa POPTR_0018s05750 I 0.668
evm.TU.supercontig_28.71 Carica papaya evm.TU.supercontig_28.71 I 0.666
Eucgr.C00724 Eucalyptus grandis Eucgr.C00724 I 0.666
GLYMA13G16890 Glycine max GLYMA13G16890 I 0.665
GLYMA17G05831 Glycine max GLYMA17G05831 I 0.665
MTR_7g117730 Medicago truncatula MTR_7g117730 I 0.665
VIT_08s0007g07230 Vitis vinifera VIT_08s0007g07230 I 0.664
Eucgr.A02110 Eucalyptus grandis Eucgr.A02110 I 0.664
orange1.1g036215m.g Citrus sinensis orange1.1g036215m.g I 0.664
Eucgr.B00866 Eucalyptus grandis Eucgr.B00866 I 0.663
GLYMA16G02570 Glycine max GLYMA16G02570 I 0.663
GLYMA07G05960 Glycine max GLYMA07G05960 I 0.663
AMTR_s00068p00099460 Amborella trichopoda AMTR_s00068p00099460 I 0.662
GLYMA10G35061 Glycine max GLYMA10G35061 I 0.662
e_gw1.61.201.1 Physcomitrella patens e_gw1.61.201.1 I 0.661
Lus10013762.g Linum usitatissimum Lus10013762.g I 0.661
POPTR_0018s05740 Populus trichocarpa POPTR_0018s05740 I 0.661