CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra022602
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra022602
T267946_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.701
0.688
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra022602.1-P
Myb
14
61
RGLWKPEEDMILRSYIDTHGEGNWADISRRSGLKRGGKSCRLRWKNYL
Bra022602.1-P
Myb
67
112
RGGMTPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
208 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Thhalv10014754m.g
Eutrema salsugineum
Thhalv10014754m.g
I
0.906
Bo2g047590
Brassica oleracea
Bo2g047590
I
0.898
Cagra.0084s0008
Capsella grandiflora
Cagra.0084s0008
I
0.880
Carubv10028642m.g
Capsella rubella
Carubv10028642m.g
I
0.880
Eucgr.C01374
Eucalyptus grandis
Eucgr.C01374
I
0.880
MYB82
Arabidopsis thaliana
AT5G52600
I
0.880
Bostr.7305s0011
Boechera stricta
Bostr.7305s0011
I
0.875
TCM_038131
Theobroma cacao
TCM_038131
I
0.870
Gorai.001G044000
Gossypium raimondii
Gorai.001G044000
I
0.859
AtMYB82
Arabidopsis lyrata
Al_scaffold_0008_1642
I
0.858
evm.TU.supercontig_46.32
Carica papaya
evm.TU.supercontig_46.32
I
0.850
Bra029113
Brassica rapa
Bra029113
I
0.847
Bo3g023140
Brassica oleracea
Bo3g023140
I
0.847
Cla016951
Citrullus lanatus
Cla016951
I
0.843
MDP0000264051
Malus domestica
MDP0000264051
I
0.842
PK01088.1
Cannabis sativa
PK01088.1
I
0.834
PRUPE_ppa016532mg
Prunus persica
PRUPE_ppa016532mg
I
0.832
gene31098-v1.0-hybrid
Fragaria vesca
gene31098-v1.0-hybrid
I
0.832
Pm027586
Prunus mume
Pm027586
I
0.832
cassava32672.m1
Manihot esculenta
cassava32672.m1
I
0.824
Cucsa.132300
Cucumis sativus
Cucsa.132300
N
0.819
Gorai.004G276500
Gossypium raimondii
Gorai.004G276500
N
0.818
MDP0000167314
Malus domestica
MDP0000167314
I
0.814
POPTR_0018s12780
Populus trichocarpa
POPTR_0018s12780
N
0.808
POPTR_0006s06530
Populus trichocarpa
POPTR_0006s06530
N
0.796
SapurV1A.0034s0330
Salix purpurea
SapurV1A.0034s0330
N
0.784
PGSC0003DMG400030913
Solanum tuberosum
PGSC0003DMG400030913
I
0.774
Solyc07g008010.2
Solanum lycopersicum
Solyc07g008010.2
I
0.774
mgf023205m
Mimulus guttatus
mgf023205m
I
0.773
SapurV1A.0197s0090
Salix purpurea
SapurV1A.0197s0090
N
0.764
SapurV1A.2191s0020
Salix purpurea
SapurV1A.2191s0020
N
0.764
cassava29820.valid.m1
Manihot esculenta
cassava29820.valid.m1
I
0.753
GLYMA19G44660
Glycine max
GLYMA19G44660
I
0.742
VIT_11s0016g05660
Vitis vinifera
VIT_11s0016g05660
N
0.736
GLYMA10G35050
Glycine max
GLYMA10G35050
I
0.728
POPTR_0018s05530
Populus trichocarpa
POPTR_0018s05530
I
0.725
PDK_20s1310471g002
Phoenix dactylifera
PDK_20s1310471g002
I
0.719
Pm029489
Prunus mume
Pm029489
I
0.719
PRUPE_ppa019380mg
Prunus persica
PRUPE_ppa019380mg
I
0.717
GSMUA_Achr3G07940_001
Musa acuminata
GSMUA_Achr3G07940_001
I
0.716
PDK_20s1554342g001
Phoenix dactylifera
PDK_20s1554342g001
I
0.716
Ca_01329
Cicer arietinum
Ca_01329
I
0.715
SapurV1A.0710s0050
Salix purpurea
SapurV1A.0710s0050
I
0.715
PDK_20s1918041g001
Phoenix dactylifera
PDK_20s1918041g001
I
0.714
Lus10039173.g
Linum usitatissimum
Lus10039173.g
I
0.714
POPTR_0006s23810
Populus trichocarpa
POPTR_0006s23810
I
0.713
SapurV1A.1276s0060
Salix purpurea
SapurV1A.1276s0060
I
0.710
AMTR_s00024p00224850
Amborella trichopoda
AMTR_s00024p00224850
I
0.710
chr1.CM0105.50.nd
Lotus japonicus
chr1.CM0105.50.nd
I
0.710
LjSGA_023691.1
Lotus japonicus
LjSGA_023691.1
I
0.710
POPTR_0013s05310
Populus trichocarpa
POPTR_0013s05310
I
0.710
SapurV1A.0003s0900
Salix purpurea
SapurV1A.0003s0900
I
0.709
POPTR_0002s17460
Populus trichocarpa
POPTR_0002s17460
I
0.709
GLYMA20G32510
Glycine max
GLYMA20G32510
I
0.707
GSMUA_Achr6G04400_001
Musa acuminata
GSMUA_Achr6G04400_001
I
0.707
GSMUA_Achr8G22690_001
Musa acuminata
GSMUA_Achr8G22690_001
I
0.707
AMTR_s00024p00224180
Amborella trichopoda
AMTR_s00024p00224180
I
0.707
GSMUA_Achr3G07950_001
Musa acuminata
GSMUA_Achr3G07950_001
I
0.707
VIT_09s0002g01410
Vitis vinifera
VIT_09s0002g01410
I
0.706
SapurV1A.0013s0160
Salix purpurea
SapurV1A.0013s0160
I
0.706
POPTR_0014s09630
Populus trichocarpa
POPTR_0014s09630
I
0.706
VIT_13s0084g00530
Vitis vinifera
VIT_13s0084g00530
I
0.703
Aquca_009_00493
Aquilegia coerulea
Aquca_009_00493
I
0.703
gene15390-v1.0-hybrid
Fragaria vesca
gene15390-v1.0-hybrid
I
0.702
AMTR_s00024p00224470
Amborella trichopoda
AMTR_s00024p00224470
I
0.701
Q2TCH0_PETHY
Petunia x hybrida
Q2TCH0_PETHY
D
0.701
POPTR_0018s05750
Populus trichocarpa
POPTR_0018s05750
I
0.700
Eucgr.K01504
Eucalyptus grandis
Eucgr.K01504
I
0.699
Eucgr.C00724
Eucalyptus grandis
Eucgr.C00724
I
0.699
MTR_7g117730
Medicago truncatula
MTR_7g117730
I
0.698
GLYMA13G16890
Glycine max
GLYMA13G16890
I
0.697
Cagra.5428s0005
Capsella grandiflora
Cagra.5428s0005
I
0.697
TT2
Arabidopsis lyrata
fgenesh2_kg.7__3049__AT5G35550.1
I
0.697
GLYMA17G05831
Glycine max
GLYMA17G05831
I
0.697
TT2
Arabidopsis thaliana
AT5G35550
I
0.697
Carubv10006684m.g
Capsella rubella
Carubv10006684m.g
I
0.697
Bostr.29044s0068
Boechera stricta
Bostr.29044s0068
I
0.697
orange1.1g036215m.g
Citrus sinensis
orange1.1g036215m.g
I
0.696
GLYMA07G05960
Glycine max
GLYMA07G05960
I
0.695
GLYMA16G02570
Glycine max
GLYMA16G02570
I
0.695
SELMODRAFT_98669
Selaginella moellendorffii
SELMODRAFT_98669
I
0.694
SELMODRAFT_127220
Selaginella moellendorffii
SELMODRAFT_127220
I
0.694
AMTR_s00068p00099460
Amborella trichopoda
AMTR_s00068p00099460
I
0.694
POPTR_0018s05740
Populus trichocarpa
POPTR_0018s05740
I
0.694
Lus10013762.g
Linum usitatissimum
Lus10013762.g
I
0.693
Bra039395
Brassica rapa
Bra039395
I
0.690
Solyc12g049300.1
Solanum lycopersicum
Solyc12g049300.1
I
0.690
VIT_11s0016g05690
Vitis vinifera
VIT_11s0016g05690
N
0.689
TCM_037379
Theobroma cacao
TCM_037379
I
0.689
TCM_037377
Theobroma cacao
TCM_037377
I
0.687
Bo1g138250
Brassica oleracea
Bo1g138250
I
0.687
PDK_20s1716541g001
Phoenix dactylifera
PDK_20s1716541g001
I
0.686
GLYMA13G09980
Glycine max
GLYMA13G09980
I
0.685
Eucgr.B03606
Eucalyptus grandis
Eucgr.B03606
I
0.685
SapurV1A.1276s0050
Salix purpurea
SapurV1A.1276s0050
I
0.685
TCM_024180
Theobroma cacao
TCM_024180
I
0.685
TCM_025910
Theobroma cacao
TCM_025910
I
0.685
MDP0000655330
Malus domestica
MDP0000655330
I
0.685
MDP0000723614
Malus domestica
MDP0000723614
I
0.685
cassava9274.m1
Manihot esculenta
cassava9274.m1
I
0.685
orange1.1g040726m.g
Citrus sinensis
orange1.1g040726m.g
I
0.685
Gorai.007G350500
Gossypium raimondii
Gorai.007G350500
I
0.685
cassava6348.valid.m1
Manihot esculenta
cassava6348.valid.m1
I
0.685
Gorai.007G260600
Gossypium raimondii
Gorai.007G260600
I
0.685
GLYMA14G24500
Glycine max
GLYMA14G24500
I
0.685
PRUPE_ppa006730mg
Prunus persica
PRUPE_ppa006730mg
I
0.685
Ciclev10015648m.g
Citrus clementina
Ciclev10015648m.g
I
0.685
Ciclev10021571m.g
Citrus clementina
Ciclev10021571m.g
I
0.684
orange1.1g040841m.g
Citrus sinensis
orange1.1g040841m.g
I
0.684
AMTR_s00068p00097220
Amborella trichopoda
AMTR_s00068p00097220
I
0.684
MDP0000915330
Malus domestica
MDP0000915330
I
0.684
PK16315.1
Cannabis sativa
PK16315.1
I
0.684
Gorai.008G126700
Gossypium raimondii
Gorai.008G126700
I
0.684
gene18691-v1.0-hybrid
Fragaria vesca
gene18691-v1.0-hybrid
I
0.684
Eucgr.D02390
Eucalyptus grandis
Eucgr.D02390
I
0.684
AMTR_s00068p00092800
Amborella trichopoda
AMTR_s00068p00092800
I
0.684
PK14784.1
Cannabis sativa
PK14784.1
I
0.684
Eucgr.C03151
Eucalyptus grandis
Eucgr.C03151
I
0.683
Gorai.004G150800
Gossypium raimondii
Gorai.004G150800
I
0.683
Si038905m.g
Setaria italica
Si038905m.g
I
0.681
Eucgr.E01031
Eucalyptus grandis
Eucgr.E01031
I
0.681
Pm018338
Prunus mume
Pm018338
I
0.681
Sb01g032770
Sorghum bicolor
Sb01g032770
I
0.681
PRUPE_ppa009439mg
Prunus persica
PRUPE_ppa009439mg
I
0.681
Pm027047
Prunus mume
Pm027047
I
0.680
MTR_4g125520
Medicago truncatula
MTR_4g125520
I
0.680
cassava36365.valid.m1
Manihot esculenta
cassava36365.valid.m1
I
0.680
GLYMA20G32500
Glycine max
GLYMA20G32500
I
0.680
PRUPE_ppa024074mg
Prunus persica
PRUPE_ppa024074mg
I
0.680
Eucgr.C00826
Eucalyptus grandis
Eucgr.C00826
I
0.679
VIT_06s0004g00570
Vitis vinifera
VIT_06s0004g00570
I
0.679
Bra027423
Brassica rapa
Bra027423
I
0.679
cassava36364.valid.m1
Manihot esculenta
cassava36364.valid.m1
I
0.678
TCM_037555
Theobroma cacao
TCM_037555
I
0.677
VIT_04s0008g01800
Vitis vinifera
VIT_04s0008g01800
I
0.677
VIT_11s0016g01310
Vitis vinifera
VIT_11s0016g01310
I
0.677
TCM_004509
Theobroma cacao
TCM_004509
I
0.677
PRUPE_ppa023768mg
Prunus persica
PRUPE_ppa023768mg
I
0.677
Pm005572
Prunus mume
Pm005572
I
0.677
F775_26191
Aegilops tauschii
F775_26191
I
0.677
Gorai.010G087200
Gossypium raimondii
Gorai.010G087200
I
0.677
TCM_037376
Theobroma cacao
TCM_037376
I
0.677
Eucgr.C00721
Eucalyptus grandis
Eucgr.C00721
I
0.677
cassava7672.valid.m1
Manihot esculenta
cassava7672.valid.m1
I
0.677
MDP0000791870
Malus domestica
MDP0000791870
I
0.676
SapurV1A.0081s0400
Salix purpurea
SapurV1A.0081s0400
I
0.676
POPTR_0013s05300
Populus trichocarpa
POPTR_0013s05300
I
0.676
POPTR_0003s21120
Populus trichocarpa
POPTR_0003s21120
I
0.676
evm.TU.supercontig_119.55
Carica papaya
evm.TU.supercontig_119.55
I
0.676
VIT_08s0007g07230
Vitis vinifera
VIT_08s0007g07230
I
0.675
Eucgr.A02110
Eucalyptus grandis
Eucgr.A02110
I
0.675
Eucgr.C03555
Eucalyptus grandis
Eucgr.C03555
I
0.675
TCM_037559
Theobroma cacao
TCM_037559
I
0.674
MDP0000210851
Malus domestica
MDP0000210851
I
0.674
Pm005570
Prunus mume
Pm005570
I
0.674
Eucgr.B00866
Eucalyptus grandis
Eucgr.B00866
I
0.674
PRUPE_ppa022205mg
Prunus persica
PRUPE_ppa022205mg
I
0.674
VIT_11s0016g01300
Vitis vinifera
VIT_11s0016g01300
I
0.674
SapurV1A.0710s0070
Salix purpurea
SapurV1A.0710s0070
I
0.674
MDP0000031172
Malus domestica
MDP0000031172
I
0.674
POPTR_0006s23840
Populus trichocarpa
POPTR_0006s23840
I
0.674
gene07416-v1.0-hybrid
Fragaria vesca
gene07416-v1.0-hybrid
I
0.672
POPTR_0019s05210
Populus trichocarpa
POPTR_0019s05210
I
0.671
cassava34176.m1
Manihot esculenta
cassava34176.m1
I
0.671
Gorai.004G044000
Gossypium raimondii
Gorai.004G044000
I
0.671
SapurV1A.0598s0010
Salix purpurea
SapurV1A.0598s0010
I
0.671
Ca_03154
Cicer arietinum
Ca_03154
I
0.671
ATMYB5
Arabidopsis lyrata
scaffold_301556.1
I
0.670
Bostr.3640s0147
Boechera stricta
Bostr.3640s0147
I
0.670
Pm013279
Prunus mume
Pm013279
I
0.670
Thhalv10022057m.g
Eutrema salsugineum
Thhalv10022057m.g
I
0.670
VIT_04s0008g01820
Vitis vinifera
VIT_04s0008g01820
I
0.670
MYB5
Arabidopsis thaliana
AT3G13540
I
0.670
e_gw1.6.239.1
Physcomitrella patens
e_gw1.6.239.1
I
0.669
AMTR_s00030p00146410
Amborella trichopoda
AMTR_s00030p00146410
I
0.668
MTR_3g083540
Medicago truncatula
MTR_3g083540
I
0.668
evm.TU.supercontig_28.71
Carica papaya
evm.TU.supercontig_28.71
I
0.668
evm.TU.supercontig_96.57
Carica papaya
evm.TU.supercontig_96.57
I
0.667
VIT_15s0046g00170
Vitis vinifera
VIT_15s0046g00170
I
0.667
SapurV1A.0390s0200
Salix purpurea
SapurV1A.0390s0200
I
0.667
POPTR_0017s02990
Populus trichocarpa
POPTR_0017s02990
I
0.667
SapurV1A.0102s0340
Salix purpurea
SapurV1A.0102s0340
I
0.667
PK05970.1
Cannabis sativa
PK05970.1
I
0.667
TCM_029121
Theobroma cacao
TCM_029121
I
0.667
Thhalv10003461m.g
Eutrema salsugineum
Thhalv10003461m.g
I
0.667
SapurV1A.1730s0020
Salix purpurea
SapurV1A.1730s0020
I
0.667
cassava6228.valid.m1
Manihot esculenta
cassava6228.valid.m1
I
0.667
Gorai.004G151000
Gossypium raimondii
Gorai.004G151000
I
0.667
Eucgr.C02096
Eucalyptus grandis
Eucgr.C02096
I
0.667
PRUPE_ppa010252mg
Prunus persica
PRUPE_ppa010252mg
I
0.667
AMTR_s00024p00250970
Amborella trichopoda
AMTR_s00024p00250970
I
0.666
Solyc01g005660.1
Solanum lycopersicum
Solyc01g005660.1
I
0.666
VIT_11s0016g01320
Vitis vinifera
VIT_11s0016g01320
I
0.666
evm.TU.supercontig_126.33
Carica papaya
evm.TU.supercontig_126.33
I
0.666
cassava28702.m1
Manihot esculenta
cassava28702.m1
I
0.666
Gorai.001G020600
Gossypium raimondii
Gorai.001G020600
I
0.666
MDP0000184538
Malus domestica
MDP0000184538
I
0.666
TCM_000535
Theobroma cacao
TCM_000535
I
0.665
GSMUA_Achr9G16040_001
Musa acuminata
GSMUA_Achr9G16040_001
I
0.665
Bo8g030520
Brassica oleracea
Bo8g030520
I
0.664
TCM_010778
Theobroma cacao
TCM_010778
I
0.664
Bra035532
Brassica rapa
Bra035532
I
0.664
Gorai.003G021100
Gossypium raimondii
Gorai.003G021100
I
0.664
fgenesh1_pm.scaffold_371000001
Physcomitrella patens
fgenesh1_pm.scaffold_371000001
I
0.662
LjT20L14.140.nd
Lotus japonicus
LjT20L14.140.nd
I
0.662
evm.TU.supercontig_25.114
Carica papaya
evm.TU.supercontig_25.114
I
0.661
gene25098-v1.0-hybrid
Fragaria vesca
gene25098-v1.0-hybrid
I
0.661
ORGLA03G0196700
Oryza glaberrima
ORGLA03G0196700
I
0.661