Pavir.Da00077 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Da00077 T289077_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.680 0.753
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.680 0.753
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.663 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da00077.1.p Myb 16 63
Pavir.Da00077.1.p Myb 69 114

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

141 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Db00593 Panicum virgatum Pavir.Db00593 I 0.898
Si006555m.g Setaria italica Si006555m.g I 0.898
Sb10g027280 Sorghum bicolor Sb10g027280 I 0.859
OS06G0679400 Oryza sativa OS06G0679400 I 0.845
OPUNC06G22490 Oryza punctata OPUNC06G22490 I 0.845
OMERI06G24960 Oryza meridionalis OMERI06G24960 I 0.845
ONIVA06G28020 Oryza nivara ONIVA06G28020 I 0.845
ORUFI06G26670 Oryza rufipogon ORUFI06G26670 I 0.845
OGLUM06G26120 Oryza glumaepatula OGLUM06G26120 I 0.845
BGIOSGA020673 Oryza indica BGIOSGA020673 I 0.845
GRMZM2G161512 Zea mays GRMZM2G161512 N 0.841
LPERR06G20610 Leersia perrieri LPERR06G20610 I 0.835
BRADI1G32720 Brachypodium distachyon BRADI1G32720 I 0.822
F775_00954 Aegilops tauschii F775_00954 I 0.821
TRIUR3_17146 Triticum urartu TRIUR3_17146 I 0.821
Traes_7AL_0AD4A7A87 Triticum aestivum Traes_7AL_0AD4A7A87 I 0.821
Traes_7DL_FAF2AE9FB Triticum aestivum Traes_7DL_FAF2AE9FB I 0.821
Traes_6DS_A0EC5D808 Triticum aestivum Traes_6DS_A0EC5D808 I 0.779
TRIUR3_22706 Triticum urartu TRIUR3_22706 I 0.779
F775_14392 Aegilops tauschii F775_14392 I 0.779
Traes_6AS_5562B97F7 Triticum aestivum Traes_6AS_5562B97F7 I 0.779
GRMZM2G343068 Zea mays GRMZM2G343068 N 0.745
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I 0.726
Si039629m.g Setaria italica Si039629m.g I 0.715
Pavir.Ib03827 Panicum virgatum Pavir.Ib03827 I 0.715
MLOC_6041 Hordeum vulgare MLOC_6041 I 0.710
TRIUR3_20797 Triticum urartu TRIUR3_20797 I 0.706
F775_23034 Aegilops tauschii F775_23034 I 0.706
MDP0000147309 Malus domestica MDP0000147309 I 0.705
GSMUA_Achr7G00280_001 Musa acuminata GSMUA_Achr7G00280_001 I 0.699
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.696
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I 0.696
Lus10027189.g Linum usitatissimum Lus10027189.g I 0.693
Lus10035275.g Linum usitatissimum Lus10035275.g I 0.693
ORGLA03G0224700 Oryza glaberrima ORGLA03G0224700 I 0.689
OPUNC03G22220 Oryza punctata OPUNC03G22220 I 0.689
OLONG_025057 Oryza longistaminata OLONG_025057 I 0.689
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I 0.689
OMERI03G21920 Oryza meridionalis OMERI03G21920 I 0.689
ORUFI03G24730 Oryza rufipogon ORUFI03G24730 I 0.689
OGLUM03G24880 Oryza glumaepatula OGLUM03G24880 I 0.689
OB03G32840 Oryza brachyantha OB03G32840 I 0.689
OBART03G24120 Oryza barthii OBART03G24120 I 0.689
OS03G0578900 Oryza sativa OS03G0578900 I 0.689
ONIVA04G15310 Oryza nivara ONIVA04G15310 I 0.689
mgf010934m Mimulus guttatus mgf010934m I 0.688
mgf019173m Mimulus guttatus mgf019173m I 0.688
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.683
AC217264.3_FG005 Zea mays AC217264.3_FG005 I 0.682
GRMZM2G070523 Zea mays GRMZM2G070523 I 0.682
Sb01g015920 Sorghum bicolor Sb01g015920 I 0.682
Gam1 Hordeum vulgare Q96464_HORVU D 0.680
F775_28392 Aegilops tauschii F775_28392 I 0.680
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.680
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.680
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.680
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.680
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.680
MTR_1g021230 Medicago truncatula MTR_1g021230 I 0.679
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.678
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.678
MDP0000308617 Malus domestica MDP0000308617 I 0.677
LPERR06G17110 Leersia perrieri LPERR06G17110 N 0.676
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.675
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.674
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.674
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.674
MDP0000179306 Malus domestica MDP0000179306 I 0.674
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.672
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I 0.672
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.672
Si000907m.g Setaria italica Si000907m.g I 0.671
MDP0000151688 Malus domestica MDP0000151688 I 0.670
Cla005406 Citrullus lanatus Cla005406 I 0.670
MDP0000176798 Malus domestica MDP0000176798 I 0.670
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.669
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.669
TRIUR3_15006 Triticum urartu TRIUR3_15006 I 0.669
LPERR03G20110 Leersia perrieri LPERR03G20110 I 0.669
F775_08967 Aegilops tauschii F775_08967 I 0.669
Gorai.002G089900 Gossypium raimondii Gorai.002G089900 I 0.668
Pavir.Da00534 Panicum virgatum Pavir.Da00534 I 0.668
TCM_030853 Theobroma cacao TCM_030853 I 0.668
Sb10g023665 Sorghum bicolor Sb10g023665 I 0.668
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.668
Si007070m.g Setaria italica Si007070m.g I 0.668
OPUNC06G18670 Oryza punctata OPUNC06G18670 I 0.668
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.667
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.667
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.667
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.667
Pm015094 Prunus mume Pm015094 I 0.667
cassava11031.m1 Manihot esculenta cassava11031.m1 I 0.666
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.666
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.666
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.666
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.666
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.666
Pm016605 Prunus mume Pm016605 I 0.666
29823.m000215 Ricinus communis 29823.m000215 I 0.666
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.666
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.666
TCM_041010 Theobroma cacao TCM_041010 I 0.666
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.666
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.666
OLONG_019401 Oryza longistaminata OLONG_019401 I 0.664
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I 0.664
OBART06G20450 Oryza barthii OBART06G20450 I 0.664
OMERI06G21070 Oryza meridionalis OMERI06G21070 I 0.664
OGLUM06G21530 Oryza glumaepatula OGLUM06G21530 I 0.664
ONIVA06G24230 Oryza nivara ONIVA06G24230 I 0.664
ORGLA06G0168900 Oryza glaberrima ORGLA06G0168900 I 0.664
ORUFI06G21880 Oryza rufipogon ORUFI06G21880 I 0.664
OBART01G34660 Oryza barthii OBART01G34660 I 0.663
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I 0.663
GLYMA04G15150 Glycine max GLYMA04G15150 I 0.663
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.663
GAMYB Oryza sativa OS01G0812000 I 0.663
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.663
OB01G43550 Oryza brachyantha OB01G43550 I 0.663
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.663
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.663
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.663
GAM1 Oryza indica BGIOSGA004670 I 0.663
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.663
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.663
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.663
TCM_011907 Theobroma cacao TCM_011907 I 0.663
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.663
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.662
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.662
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.661
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.661
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.661
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.661
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.661
Bo9g119060 Brassica oleracea Bo9g119060 I 0.661
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.661
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.661
Bra002938 Brassica rapa Bra002938 I 0.661
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.661