CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bostr.4825s0021
(
Boechera stricta
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Bostr.4825s0021
T297315_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC68
M07214_2.00
Arabidopsis thaliana
RCTTVYNBNNYAAGY
RCTTRNNVNRBAAGY
Dap-seq
OMalley et al.(2016)
NTM1_col_a
0.952
0.723
NAC68
M07215_2.00
Arabidopsis thaliana
HDYYRCTTTTTNNHYHYHNNN
NNNDRDRDNNAAAAAGYRRHD
Dap-seq
OMalley et al.(2016)
NTM1_colamp_a
0.952
0.723
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.896
0.625
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.4825s0021.1.p
NAC/NAM
5
132
LIGYRFSPTGEELVNHYLKNKNLGNTCLVDEAISEINILNYIPEDLPGLAKIQSDDLKWYFFSRIEYTNAKKKAMKRSTGSGFWKPTGKDRIIRDKRRNGVEIGLKKTLVYHERKALNGVRTDWRTYV
Links
Other
NAC/NAM
family TFs
Other
Boechera stricta
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.4825s0024
Boechera stricta
Bostr.4825s0024
N
0.972
Bostr.10064s0010
Boechera stricta
Bostr.10064s0010
I
0.970
Carubv10000489m.g
Capsella rubella
Carubv10000489m.g
I
0.969
NAC68
Arabidopsis thaliana
AT4G01540
D
0.952
Cagra.12529s0001
Capsella grandiflora
Cagra.12529s0001
I
0.949
anac067
Arabidopsis thaliana
AT4G01520
I
0.948
Carubv10003260m.g
Capsella rubella
Carubv10003260m.g
I
0.926
Bo00853s060
Brassica oleracea
Bo00853s060
I
0.922
Bo9g004090
Brassica oleracea
Bo9g004090
I
0.920
Bo6g119080
Brassica oleracea
Bo6g119080
I
0.920
Bra036327
Brassica rapa
Bra036327
I
0.914
Bostr.4825s0023
Boechera stricta
Bostr.4825s0023
I
0.908
Bra008553
Brassica rapa
Bra008553
I
0.897
NAC69
Arabidopsis thaliana
AT4G01550
D
0.896
anac069
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002854
I
0.896
Thhalv10028684m.g
Eutrema salsugineum
Thhalv10028684m.g
I
0.890
Bo9g004100
Brassica oleracea
Bo9g004100
I
0.885
Bo9g004110
Brassica oleracea
Bo9g004110
I
0.882
Bo9g061230
Brassica oleracea
Bo9g061230
I
0.876