Carubv10003051m.g (Capsella rubella)
NFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01422 (zf-NF-X1) IPR000967 Carubv10003051m.g T300960_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003051m NFX 195 212
Carubv10003051m NFX 230 265
Carubv10003051m NFX 300 318
Carubv10003051m NFX 354 373
Carubv10003051m NFX 407 425
Carubv10003051m NFX 428 452
Carubv10003051m NFX 499 511
Carubv10003051m NFX 520 531
Carubv10003051m NFX 602 613
Carubv10003051m NFX 643 660
Carubv10003051m NFX 706 726

Links

Other NFX family TFs
Other Capsella rubella TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1504s0067 Capsella grandiflora Cagra.1504s0067 N 1.000
Thhalv10012642m.g Eutrema salsugineum Thhalv10012642m.g N 0.973
NFXL2 Arabidopsis thaliana AT5G05660 N 0.957
Cucsa.136670 Cucumis sativus Cucsa.136670 N 0.843
Aquca_045_00093 Aquilegia coerulea Aquca_045_00093 N 0.822
cassava20878.m1 Manihot esculenta cassava20878.m1 N 0.806
PRUPE_ppa001277mg Prunus persica PRUPE_ppa001277mg N 0.802
Pm018929 Prunus mume Pm018929 N 0.797
mgf001689m Mimulus guttatus mgf001689m N 0.768
MLOC_4879 Hordeum vulgare MLOC_4879 N 0.762
Traes_3AS_496047B73 Triticum aestivum Traes_3AS_496047B73 N 0.759
Ca_13412 Cicer arietinum Ca_13412 N 0.757
Bra009123 Brassica rapa Bra009123 N 0.751
Bo9g177030 Brassica oleracea Bo9g177030 N 0.751
evm.TU.supercontig_19.173 Carica papaya evm.TU.supercontig_19.173 N 0.741
Gorai.010G197800 Gossypium raimondii Gorai.010G197800 N 0.741
Eucgr.J00206 Eucalyptus grandis Eucgr.J00206 N 0.730
ATNFXL2 Vitis vinifera VIT_13s0067g00920 N 0.730
SELMODRAFT_510 Selaginella moellendorffii SELMODRAFT_510 N 0.724
TCM_042496 Theobroma cacao TCM_042496 N 0.719
Bostr.13129s0405 Boechera stricta Bostr.13129s0405 N 0.709
ATNFXL2 Arabidopsis lyrata fgenesh2_kg.6__500__AT5G05660.1 N 0.708
Solyc06g051570.2 Solanum lycopersicum Solyc06g051570.2 N 0.703
POPTR_0010s19600 Populus trichocarpa POPTR_0010s19600 N 0.703