nhr-98 (Caenorhabditis elegans)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 WBGene00003688 T306210_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in pharynx. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-182
M00701_2.00 		Caenorhabditis elegans
DWBYGTGWCH
DGWCACRVWH		 PBM
Narasimhan et al.(2015)
pTH10779 		0.849 0.500
nhr-182
M00702_2.00 		Caenorhabditis elegans
NNNHRTRNHN
NDNYAYDNNN		 PBM
Narasimhan et al.(2015)
pTH6106 		0.849 0.500
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
M02H5.6 Nuclear receptor 42 111

Links

Other Nuclear receptor family TFs
Other Caenorhabditis elegans TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nhr-123 Caenorhabditis elegans WBGene00003713 I 0.992
nhr-99 Caenorhabditis elegans WBGene00003689 I 0.982
nhr-201 Caenorhabditis elegans WBGene00019741 I 0.977
nhr-202 Caenorhabditis elegans WBGene00019742 I 0.974
nhr-203 Caenorhabditis elegans WBGene00019743 N 0.951
CBN17580 Caenorhabditis brenneri CBN17580 N 0.938
CRE09225 Caenorhabditis remanei CRE09225 N 0.928
CBG01353 Caenorhabditis briggsae CBG01353 I 0.924
CRE09227 Caenorhabditis remanei CRE09227 N 0.921
CBG01352 Caenorhabditis briggsae CBG01352 I 0.920
CRE09224 Caenorhabditis remanei CRE09224 N 0.893
CBG01359 Caenorhabditis briggsae CBG01359 N 0.889
CBG01357 Caenorhabditis briggsae CBG01357 N 0.880
nhr-182 Caenorhabditis elegans WBGene00018265 D 0.849
CBN03087 Caenorhabditis brenneri CBN03087 I 0.831
CRE09222 Caenorhabditis remanei CRE09222 I 0.808
nhr-55 Caenorhabditis elegans WBGene00003645 I 0.807
CBG17898 Caenorhabditis briggsae CBG17898 I 0.805
CBG04928 Caenorhabditis briggsae CBG04928 I 0.804
CRE14845 Caenorhabditis remanei CRE14845 I 0.794
CRE10693 Caenorhabditis remanei CRE10693 I 0.785
CBN13200 Caenorhabditis brenneri CBN13200 I 0.785
CRE15097 Caenorhabditis remanei CRE15097 I 0.785
CRE08749 Caenorhabditis remanei CRE08749 I 0.777
CJA19466 Caenorhabditis japonica CJA19466 I 0.776
CBG19144 Caenorhabditis briggsae CBG19144 I 0.762
CRE05778 Caenorhabditis remanei CRE05778 I 0.754
CRE13011 Caenorhabditis remanei CRE13011 I 0.747