CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CBG04928
(
Caenorhabditis briggsae
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CBG04928
T301461_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-232
M00700_2.00
Caenorhabditis elegans
NNTNTDWYN
NRWHANANN
PBM
Narasimhan et al.(2015)
pTH10647
0.829
0.544
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG04928
Nuclear receptor
1
69
CKICGYPGHGVHFGVITCRACAAFFRRFVVMNLQYSCVKSEVRCSLDRIRRSSCRHCRFQKCLQMGMKA
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis briggsae
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBN13200
Caenorhabditis brenneri
CBN13200
I
0.987
CRE15097
Caenorhabditis remanei
CRE15097
I
0.986
CRE10693
Caenorhabditis remanei
CRE10693
I
0.986
CBG04929
Caenorhabditis briggsae
CBG04929
I
0.983
CBG19169
Caenorhabditis briggsae
CBG19169
I
0.980
nhr-30
Caenorhabditis elegans
WBGene00016091
N
0.972
CBG16982
Caenorhabditis briggsae
CBG16982
I
0.959
CRE13011
Caenorhabditis remanei
CRE13011
I
0.951
CBN00434
Caenorhabditis brenneri
CBN00434
I
0.938
PEQ_0000560101
Parascaris equorum
PEQ_0000560101
I
0.900
ANCCEY_07914
Ancylostoma ceylanicum
ANCCEY_07914
I
0.900
nhr-201
Caenorhabditis elegans
WBGene00019741
I
0.887
CRE12950
Caenorhabditis remanei
CRE12950
I
0.877
scaffold31-EXSNAP2012.20
Pristionchus exspectatus
scaffold31-EXSNAP2012.20
I
0.871
CBG09567
Caenorhabditis briggsae
CBG09567
I
0.867
nhr-202
Caenorhabditis elegans
WBGene00019742
I
0.845
HCOI01190000
Haemonchus contortus
HCOI01190000
I
0.836
HPLM_0000974301
Haemonchus placei
HPLM_0000974301
I
0.836
nhr-232
Caenorhabditis elegans
WBGene00012494
D
0.829
CRE05044
Caenorhabditis remanei
CRE05044
I
0.824
nhr-98
Caenorhabditis elegans
WBGene00003688
I
0.804
nhr-123
Caenorhabditis elegans
WBGene00003713
I
0.802
SVUK_0002058501
Strongylus vulgaris
SVUK_0002058501
I
0.798
NBR_0001834701
Nippostrongylus brasiliensis
NBR_0001834701
I
0.797
CBG15881
Caenorhabditis briggsae
CBG15881
I
0.795
CBN03087
Caenorhabditis brenneri
CBN03087
I
0.791
nhr-203
Caenorhabditis elegans
WBGene00019743
N
0.789
nhr-218
Caenorhabditis elegans
WBGene00011750
I
0.786
CRE30948
Caenorhabditis remanei
CRE30948
I
0.777
NBR_0001218401
Nippostrongylus brasiliensis
NBR_0001218401
I
0.772
nhr-44
Caenorhabditis elegans
WBGene00003634
I
0.770
nhr-99
Caenorhabditis elegans
WBGene00003689
I
0.761
ANCCEY_13226
Ancylostoma ceylanicum
ANCCEY_13226
I
0.758
HCOI00483700
Haemonchus contortus
HCOI00483700
I
0.758
HPLM_0000277901
Haemonchus placei
HPLM_0000277901
I
0.758
L892_g2782
Steinernema scapterisci
L892_g2782
I
0.756
CJA03572
Caenorhabditis japonica
CJA03572
I
0.755
HPBE_0001646201
Heligmosomoides bakeri
HPBE_0001646201
I
0.750