CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CBG16982
(
Caenorhabditis briggsae
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CBG16982
T301557_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-232
M00700_2.00
Caenorhabditis elegans
NNTNTDWYN
NRWHANANN
PBM
Narasimhan et al.(2015)
pTH10647
0.897
0.557
nhr-216
M00705_2.00
Caenorhabditis elegans
RRTCAGAAN
NTTCTGAYY
PBM
Narasimhan et al.(2015)
pTH10811
0.755
0.514
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG16982
Nuclear receptor
18
88
TICKICSYPAHGKHFGVMTCRACAVFFRRVVKLNLVYQCLKNKTKCSLNMIRRNSCRYCRFQKCLKMGMTL
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis briggsae
TFs
36 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBG04928
Caenorhabditis briggsae
CBG04928
I
0.959
CBN13200
Caenorhabditis brenneri
CBN13200
I
0.947
CRE15097
Caenorhabditis remanei
CRE15097
I
0.946
CRE10693
Caenorhabditis remanei
CRE10693
I
0.946
CBG04929
Caenorhabditis briggsae
CBG04929
I
0.924
CBG09567
Caenorhabditis briggsae
CBG09567
I
0.917
CBG19169
Caenorhabditis briggsae
CBG19169
I
0.903
nhr-232
Caenorhabditis elegans
WBGene00012494
D
0.897
scaffold31-EXSNAP2012.20
Pristionchus exspectatus
scaffold31-EXSNAP2012.20
I
0.897
CRE13011
Caenorhabditis remanei
CRE13011
I
0.891
nhr-30
Caenorhabditis elegans
WBGene00016091
N
0.877
L892_g2782
Steinernema scapterisci
L892_g2782
I
0.876
PEQ_0000560101
Parascaris equorum
PEQ_0000560101
I
0.870
ANCCEY_07914
Ancylostoma ceylanicum
ANCCEY_07914
I
0.858
L596_g14588
Steinernema carpocapsae
L596_g14588
I
0.857
HCOI01190000
Haemonchus contortus
HCOI01190000
I
0.856
HPLM_0000974301
Haemonchus placei
HPLM_0000974301
I
0.856
CRE30948
Caenorhabditis remanei
CRE30948
I
0.855
CRE12950
Caenorhabditis remanei
CRE12950
I
0.845
SVUK_0002058501
Strongylus vulgaris
SVUK_0002058501
I
0.840
CBN00434
Caenorhabditis brenneri
CBN00434
I
0.828
L893_g18997
Steinernema glaseri
L893_g18997
I
0.822
NBR_0001218401
Nippostrongylus brasiliensis
NBR_0001218401
I
0.807
HPBE_0001646201
Heligmosomoides bakeri
HPBE_0001646201
I
0.805
L898_g21763
Steinernema monticolum
L898_g21763
I
0.802
HCOI00483700
Haemonchus contortus
HCOI00483700
I
0.795
ANCCEY_13226
Ancylostoma ceylanicum
ANCCEY_13226
I
0.795
HPLM_0000277901
Haemonchus placei
HPLM_0000277901
I
0.795
L898_g3512
Steinernema monticolum
L898_g3512
I
0.786
L893_g18993
Steinernema glaseri
L893_g18993
I
0.784
NBR_0001834701
Nippostrongylus brasiliensis
NBR_0001834701
I
0.765
CBN13022
Caenorhabditis brenneri
CBN13022
I
0.764
SVUK_0001603001
Strongylus vulgaris
SVUK_0001603001
I
0.760
CBG15881
Caenorhabditis briggsae
CBG15881
I
0.757
nhr-216
Caenorhabditis elegans
WBGene00020385
D
0.755
CBG09399
Caenorhabditis briggsae
CBG09399
I
0.747