DAPPUDRAFT_64123 (Daphnia pulex)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 DAPPUDRAFT_64123 T318099_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.700 0.633
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.700 0.633
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.700 0.633
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.700 0.633
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.688 0.506
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.688 0.506
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.688 0.506
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.688 0.506
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.688 0.506
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.688 0.506
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.688 0.506
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.688 0.506
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.688 0.506
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.688 0.506
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.688 0.506
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.688 0.506
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.688 0.506
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.688 0.506
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.688 0.506
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFX67100 RFX 53 131

Links

Other RFX family TFs
Other Daphnia pulex TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NV23037 Nasonia vitripennis NV23037 I 0.753
ACEP24602 Atta cephalotes ACEP24602 I 0.753
SINV24627 Solenopsis invicta SINV24627 I 0.753
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.753
GB49419 Apis mellifera GB49419 I 0.753
L798_03377 Zootermopsis nevadensis L798_03377 I 0.747
PHUM035280 Pediculus humanus PHUM035280 I 0.745
TC008959 Tribolium castaneum TC008959 I 0.744
MCINX003210 Melitaea cinxia MCINX003210 I 0.743
HMEL011744 Heliconius melpomene HMEL011744 I 0.743
LCUP014592 Lucilia cuprina LCUP014592 I 0.742
KGM_16732 Danaus plexippus KGM_16732 I 0.742
MDOA009335 Musca domestica MDOA009335 I 0.742
AMEM009524 Anopheles merus AMEM009524 I 0.739
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.739
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.739
ASIS020285 Anopheles sinensis ASIS020285 I 0.739
AMEC002251 Anopheles melas AMEC002251 I 0.739
AMIN003942 Anopheles minimus AMIN003942 I 0.739
ACUA017169 Anopheles culicifacies ACUA017169 I 0.739
AATE016751 Anopheles atroparvus AATE016751 I 0.739
AARA004226 Anopheles arabiensis AARA004226 I 0.739
AALB008384 Anopheles albimanus AALB008384 I 0.739
ACHR008891 Anopheles christyi ACHR008891 I 0.739
ACOM036649 Anopheles coluzzii ACOM036649 I 0.739
AEPI006624 Anopheles epiroticus AEPI006624 I 0.739
ADIR010232 Anopheles dirus ADIR010232 I 0.739
AFUN011072 Anopheles funestus AFUN011072 I 0.739
AFAF011654 Anopheles farauti AFAF011654 I 0.739
ADAC008404 Anopheles darlingi ADAC008404 I 0.739
AGAP013226 Anopheles gambiae AGAP013226 I 0.739
CLEC011984 Cimex lectularius CLEC011984 I 0.738
AAEL013752 Aedes aegypti AAEL013752 I 0.737
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.736
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.736
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.736
GG10435 Drosophila erecta FBgn0102744 I 0.735
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.735
GD19544 Drosophila simulans FBgn0191039 I 0.735
GE24099 Drosophila yakuba FBgn0241238 I 0.735
GJ22650 Drosophila virilis FBgn0209754 I 0.735
GK13786 Drosophila willistoni FBgn0215794 I 0.735
GL22063 Drosophila persimilis FBgn0159655 I 0.735
GM10553 Drosophila sechellia FBgn0165499 I 0.735
CG9727 Drosophila melanogaster FBgn0037445 I 0.735
GI24583 Drosophila mojavensis FBgn0147305 I 0.735
GH18082 Drosophila grimshawi FBgn0125550 I 0.734
GF16654 Drosophila ananassae FBgn0093675 I 0.734
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.729
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.723
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.717
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.716
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.716
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.716
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.716
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.716
A_01977 Schistosoma haematobium A_01977 I 0.715
Smp_040350 Schistosoma mansoni Smp_040350 I 0.715
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.715
TsM_000553100 Taenia solium TsM_000553100 I 0.715
ISCW001129 Ixodes scapularis ISCW001129 I 0.709
T265_11740 Opisthorchis viverrini T265_11740 I 0.707
csin102559 Clonorchis sinensis csin102559 I 0.707
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.706
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.704
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.704
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.703
RFX7 Felis catus ENSFCAG00000029408 I 0.703
RFX7 Oryzias latipes ENSORLG00000005342 I 0.701
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.701
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.701
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.701
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.701
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.701
rfx7 Danio rerio ENSDARG00000077237 I 0.701
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.701
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.701
RFX7 Procavia capensis ENSPCAG00000004974 I 0.700
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.700
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.700
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.700
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.700
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.700
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.700
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.700
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.700
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.700
Rfx7 Mus musculus ENSMUSG00000037674 D 0.700
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.700
RFX7 Danio rerio ENSDARG00000103691 I 0.700
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.700
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.700
RFX7 Homo sapiens ENSG00000181827 D 0.700
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.700
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.700
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.700
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.700
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.700
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.700
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.700
RFX7 Bos taurus ENSBTAG00000000565 I 0.700
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.700
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.700
RFX7 Canis familiaris ENSCAFG00000016029 I 0.700
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.700
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.700
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.700
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.699
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.699
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.698
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.698
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.698
LotgiG138119 Lottia gigantea LotgiG138119 I 0.697
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.696
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.696
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.696
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.695
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.695
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.695
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.695
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.694
RFX7 Equus caballus ENSECAG00000002379 I 0.694
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.694
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.694
RFX7 Sorex araneus ENSSARG00000010801 I 0.694
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.694
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.694
Aan_R011989 Calypte anna Aan_R011989 I 0.694
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.694
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.693
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.692
rfx7 Oryzias latipes ENSORLG00000008583 I 0.692
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.692
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.691
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.691
RFX5 Gallus gallus ENSGALG00000000836 I 0.691
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.690
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.690
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.689
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.689
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.689
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.689
Rfx5 Mus musculus ENSMUSG00000005774 I 0.689
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.689
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.689
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.688
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.688
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.688
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.688
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.688
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.688
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.688
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.688
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.688
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.688
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.688
RFX5 Procavia capensis ENSPCAG00000011056 I 0.688
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.688
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.688
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.688
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.688
RFX5 Homo sapiens ENSG00000143390 D 0.688
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.688
RFX5 Canis familiaris ENSCAFG00000012661 I 0.688
RFX5 Bos taurus ENSBTAG00000017580 I 0.688
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.688
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.688
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.688
RFX5 Felis catus ENSFCAG00000005568 I 0.688
RFX5 Echinops telfairi ENSETEG00000013503 I 0.688
RFX5 Equus caballus ENSECAG00000024774 I 0.688
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.688
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.688
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.688
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.688
RFX5 Sus scrofa ENSSSCG00000006625 I 0.688
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.688
RFX5 Sorex araneus ENSSARG00000000750 I 0.688
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.688
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.688
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.688
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.687
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.687
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.687
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.687
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.686
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.686
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.686
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.686
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.686
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.686
CapteG131555 Capitella teleta CapteG131555 I 0.685
rfx5 Danio rerio ENSDARG00000063258 I 0.685
RFX7 Echinops telfairi ENSETEG00000015037 I 0.685
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.685
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.685
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.684
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.684
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.684
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.684
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.683
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.681
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.681
Aan_R010941 Calypte anna Aan_R010941 I 0.680
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.675
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.674
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.673
LLOJ009233 Lutzomyia longipalpis LLOJ009233 N 0.668
MESCA005939 Megaselia scalaris MESCA005939 N 0.668
MESCA006788 Megaselia scalaris MESCA006788 N 0.667
AQUA006869 Anopheles quadriannulatus AQUA006869 N 0.663
DI09_91p30 Microsporidia sp DI09_91p30 I 0.659
DI09_1p30 Microsporidia sp DI09_1p30 I 0.659
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.658
HelroG70386 Helobdella robusta HelroG70386 I 0.655
PTSG_12063 Salpingoeca rosetta PTSG_12063 I 0.654
ECPE_0001391801 Echinostoma caproni ECPE_0001391801 N 0.654
SPU_002235 Strongylocentrotus purpuratus SPU_002235 I 0.654
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.653
ACYPI002124 Acyrthosiphon pisum ACYPI002124 I 0.653
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.653
MhA1_Contig1476.frz3.gene5 Meloidogyne hapla MhA1_Contig1476.frz3.gene5 I 0.652
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.652
SOCG_01623 Schizosaccharomyces octosporus SOCG_01623 I 0.652
PTSG_10225 Salpingoeca rosetta PTSG_10225 I 0.652
rfx1/2/3 Ciona intestinalis ENSCING00000009186 I 0.652
D915_00887 Fasciola hepatica D915_00887 I 0.651
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.651
ENSOARG00000007055 Ovis aries ENSOARG00000007055 I 0.651
SPOG_03909 Schizosaccharomyces cryophilus SPOG_03909 I 0.651