RFX5 (Choloepus hoffmanni)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSCHOG00000012900 T318161_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.788 0.987
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.788 0.987
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.788 0.987
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.788 0.987
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.788 0.987
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.788 0.987
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.788 0.987
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.788 0.987
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.788 0.987
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.788 0.987
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.788 0.987
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.788 0.987
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.788 0.987
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.788 0.987
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.788 0.987
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.706 0.608
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.706 0.608
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.706 0.608
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.706 0.608
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000011419 RFX 89 168

Links

Other RFX family TFs
Other Choloepus hoffmanni TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.788
RFX5 Homo sapiens ENSG00000143390 D 0.788
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.788
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.788
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.788
RFX5 Felis catus ENSFCAG00000005568 I 0.788
RFX5 Echinops telfairi ENSETEG00000013503 I 0.788
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.788
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.788
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.788
RFX5 Equus caballus ENSECAG00000024774 I 0.788
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.788
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.788
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.788
RFX5 Sorex araneus ENSSARG00000000750 I 0.788
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.788
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.788
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.788
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.788
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.788
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.788
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.788
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.788
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.788
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.788
RFX5 Sus scrofa ENSSSCG00000006625 I 0.788
RFX5 Bos taurus ENSBTAG00000017580 I 0.788
RFX5 Canis familiaris ENSCAFG00000012661 I 0.788
Rfx5 Mus musculus ENSMUSG00000005774 I 0.786
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.786
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.786
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.784
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.784
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.779
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.778
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.778
RFX5 Procavia capensis ENSPCAG00000011056 I 0.776
RFX5 Gallus gallus ENSGALG00000000836 I 0.765
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.760
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.760
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.759
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.759
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.757
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.755
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.755
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.746
Aan_R010941 Calypte anna Aan_R010941 I 0.743
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.741
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.740
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.740
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.739
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.739
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.738
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.738
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.737
rfx5 Danio rerio ENSDARG00000063258 I 0.735
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.735
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.735
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.733
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.732
rfx7 Danio rerio ENSDARG00000077237 I 0.714
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.712
RFX7 Oryzias latipes ENSORLG00000005342 I 0.712
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.712
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.712
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.712
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.712
RFX7 Danio rerio ENSDARG00000103691 I 0.712
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.711
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.711
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.709
RFX7 Felis catus ENSFCAG00000029408 I 0.708
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.708
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.708
T265_11740 Opisthorchis viverrini T265_11740 I 0.707
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.707
csin102559 Clonorchis sinensis csin102559 I 0.707
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.707
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.706
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.706
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.706
RFX7 Canis familiaris ENSCAFG00000016029 I 0.706
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.706
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.706
RFX7 Procavia capensis ENSPCAG00000004974 I 0.706
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.706
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.706
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.706
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.706
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.706
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.706
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.706
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.706
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.706
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.706
RFX7 Homo sapiens ENSG00000181827 D 0.706
Rfx7 Mus musculus ENSMUSG00000037674 D 0.706
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.706
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.706
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.706
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.706
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.706
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.706
RFX7 Bos taurus ENSBTAG00000000565 I 0.706
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.706
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.706
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.705
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.705
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.705
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.703
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.703
RFX7 Equus caballus ENSECAG00000002379 I 0.701
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.701
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.701
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.701
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.701
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.701
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.701
Aan_R011989 Calypte anna Aan_R011989 I 0.701
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.701
RFX7 Sorex araneus ENSSARG00000010801 I 0.701
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.699
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.698
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.698
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.697
A_01977 Schistosoma haematobium A_01977 I 0.696
Smp_040350 Schistosoma mansoni Smp_040350 I 0.696
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.696
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.695
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.695
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.695
TsM_000553100 Taenia solium TsM_000553100 I 0.695
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.694
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.694
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.693
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.693
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.693
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.693
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.693
rfx7 Oryzias latipes ENSORLG00000008583 I 0.692
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.691
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.691
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.691
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.690
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.689
RFX5 Dasypus novemcinctus ENSDNOG00000035113 I 0.688
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.687
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.687
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.686
RFX7 Echinops telfairi ENSETEG00000015037 I 0.686
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.686
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.686
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.686
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.685
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.684
LotgiG138119 Lottia gigantea LotgiG138119 I 0.683
CapteG131555 Capitella teleta CapteG131555 I 0.683
L798_03377 Zootermopsis nevadensis L798_03377 I 0.683
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.681
ACEP24602 Atta cephalotes ACEP24602 I 0.680
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.680
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.680
GB49419 Apis mellifera GB49419 I 0.680
TC008959 Tribolium castaneum TC008959 I 0.680
SINV24627 Solenopsis invicta SINV24627 I 0.680
MCINX003210 Melitaea cinxia MCINX003210 I 0.679
HMEL011744 Heliconius melpomene HMEL011744 I 0.679
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.679
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.678
NV23037 Nasonia vitripennis NV23037 I 0.677
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.677
PHUM035280 Pediculus humanus PHUM035280 I 0.676
KGM_16732 Danaus plexippus KGM_16732 I 0.676
AFAF011654 Anopheles farauti AFAF011654 I 0.673
MDOA009335 Musca domestica MDOA009335 I 0.672
LCUP014592 Lucilia cuprina LCUP014592 I 0.672
AFUN011072 Anopheles funestus AFUN011072 I 0.671
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.671
ADIR010232 Anopheles dirus ADIR010232 I 0.671
ACOM036649 Anopheles coluzzii ACOM036649 I 0.671
ACHR008891 Anopheles christyi ACHR008891 I 0.671
CG9727 Drosophila melanogaster FBgn0037445 I 0.671
ACUA017169 Anopheles culicifacies ACUA017169 I 0.671
AMEC002251 Anopheles melas AMEC002251 I 0.671
AEPI006624 Anopheles epiroticus AEPI006624 I 0.671
AMIN003942 Anopheles minimus AMIN003942 I 0.671
GI24583 Drosophila mojavensis FBgn0147305 I 0.671
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.671
GJ22650 Drosophila virilis FBgn0209754 I 0.671
GD19544 Drosophila simulans FBgn0191039 I 0.671
GM10553 Drosophila sechellia FBgn0165499 I 0.671
ASIS020285 Anopheles sinensis ASIS020285 I 0.671
AATE016751 Anopheles atroparvus AATE016751 I 0.671
GL22063 Drosophila persimilis FBgn0159655 I 0.671
GF16654 Drosophila ananassae FBgn0093675 I 0.671
GG10435 Drosophila erecta FBgn0102744 I 0.671
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.671
AMEM009524 Anopheles merus AMEM009524 I 0.671
GK13786 Drosophila willistoni FBgn0215794 I 0.671
CLEC011984 Cimex lectularius CLEC011984 I 0.671
AARA004226 Anopheles arabiensis AARA004226 I 0.671
GE24099 Drosophila yakuba FBgn0241238 I 0.671
AGAP013226 Anopheles gambiae AGAP013226 I 0.671
AALB008384 Anopheles albimanus AALB008384 I 0.671
ADAC008404 Anopheles darlingi ADAC008404 I 0.671
GH18082 Drosophila grimshawi FBgn0125550 I 0.670
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.669
AAEL013752 Aedes aegypti AAEL013752 I 0.669
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.669
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.667
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.665
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.664
ISCW001129 Ixodes scapularis ISCW001129 I 0.662
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.662
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.661
fgenesh2_pg.scaffold_3000303 Monosiga brevicollis fgenesh2_pg.scaffold_3000303 I 0.660
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.657
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.657
D915_00887 Fasciola hepatica D915_00887 I 0.656
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.656
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.654
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.654
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.654
BDDG_02784 Blastomyces dermatitidis BDDG_02784 I 0.653
KAFR_0H03130 Kazachstania africana KAFR_0H03130 I 0.653
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.652
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.652