SMU15027042 (Schmidtea mediterranea)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 SMU15027042 T319077_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.705 0.582
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.705 0.582
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.705 0.582
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.705 0.582
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.701 0.532
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.701 0.532
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.701 0.532
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.701 0.532
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.701 0.532
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.701 0.532
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.701 0.532
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.701 0.532
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.701 0.532
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.701 0.532
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.701 0.532
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.701 0.532
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.701 0.532
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.701 0.532
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.701 0.532
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMU15027042 RFX 149 227

Links

Other RFX family TFs
Other Schmidtea mediterranea TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.728
TsM_000553100 Taenia solium TsM_000553100 I 0.728
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.728
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.728
T265_11740 Opisthorchis viverrini T265_11740 I 0.727
Smp_040350 Schistosoma mansoni Smp_040350 I 0.727
A_01977 Schistosoma haematobium A_01977 I 0.727
csin102559 Clonorchis sinensis csin102559 I 0.727
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.725
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.724
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.724
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.723
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.721
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.721
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.715
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.711
rfx7 Danio rerio ENSDARG00000077237 I 0.711
RFX7 Danio rerio ENSDARG00000103691 I 0.710
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.710
RFX7 Oryzias latipes ENSORLG00000005342 I 0.710
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.710
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.710
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.710
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.710
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.710
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.710
LotgiG138119 Lottia gigantea LotgiG138119 I 0.709
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.709
CapteG131555 Capitella teleta CapteG131555 I 0.709
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.709
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.709
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.709
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.708
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.708
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.708
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.707
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.706
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.706
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.706
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.706
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.706
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.706
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.706
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.705
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.705
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.705
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.705
Rfx7 Mus musculus ENSMUSG00000037674 D 0.705
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.705
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.705
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.705
RFX7 Procavia capensis ENSPCAG00000004974 I 0.705
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.705
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.705
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.705
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.705
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.705
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.705
RFX7 Canis familiaris ENSCAFG00000016029 I 0.705
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.705
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.705
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.705
RFX7 Bos taurus ENSBTAG00000000565 I 0.705
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.705
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.705
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.705
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.705
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.705
rfx5 Danio rerio ENSDARG00000063258 I 0.705
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.705
RFX7 Homo sapiens ENSG00000181827 D 0.705
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.705
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.705
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.705
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.705
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.705
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.705
rfx7 Oryzias latipes ENSORLG00000008583 I 0.704
RFX5 Gallus gallus ENSGALG00000000836 I 0.704
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.703
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.703
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.703
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.703
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.703
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.703
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.703
RFX5 Sorex araneus ENSSARG00000000750 I 0.702
RFX5 Echinops telfairi ENSETEG00000013503 I 0.702
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.702
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.702
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.702
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.702
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.702
RFX5 Homo sapiens ENSG00000143390 D 0.701
RFX5 Felis catus ENSFCAG00000005568 I 0.701
RFX5 Bos taurus ENSBTAG00000017580 I 0.701
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.701
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.701
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.701
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.701
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.701
RFX5 Equus caballus ENSECAG00000024774 I 0.701
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.701
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.701
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.701
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.701
RFX5 Canis familiaris ENSCAFG00000012661 I 0.701
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.701
RFX5 Sus scrofa ENSSSCG00000006625 I 0.701
Rfx5 Mus musculus ENSMUSG00000005774 I 0.701
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.701
RFX5 Procavia capensis ENSPCAG00000011056 I 0.701
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.701
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.701
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.701
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.701
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.701
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.701
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.701
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.701
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.701
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.701
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.700
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.700
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.700
GB49419 Apis mellifera GB49419 I 0.700
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.700
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.700
ACEP24602 Atta cephalotes ACEP24602 I 0.700
SINV24627 Solenopsis invicta SINV24627 I 0.700
RFX7 Equus caballus ENSECAG00000002379 I 0.700
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.700
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.700
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.700
Aan_R011989 Calypte anna Aan_R011989 I 0.700
RFX7 Felis catus ENSFCAG00000029408 I 0.700
RFX7 Sorex araneus ENSSARG00000010801 I 0.700
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.700
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.700
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.700
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.700
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.699
ASIS020285 Anopheles sinensis ASIS020285 I 0.699
AMIN003942 Anopheles minimus AMIN003942 I 0.699
AMEM009524 Anopheles merus AMEM009524 I 0.699
AMEC002251 Anopheles melas AMEC002251 I 0.699
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.699
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.699
ADAC008404 Anopheles darlingi ADAC008404 I 0.699
AGAP013226 Anopheles gambiae AGAP013226 I 0.699
AALB008384 Anopheles albimanus AALB008384 I 0.699
AFUN011072 Anopheles funestus AFUN011072 I 0.699
AEPI006624 Anopheles epiroticus AEPI006624 I 0.699
AATE016751 Anopheles atroparvus AATE016751 I 0.699
ACHR008891 Anopheles christyi ACHR008891 I 0.699
ACOM036649 Anopheles coluzzii ACOM036649 I 0.699
ADIR010232 Anopheles dirus ADIR010232 I 0.699
ACUA017169 Anopheles culicifacies ACUA017169 I 0.699
AARA004226 Anopheles arabiensis AARA004226 I 0.699
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.698
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.698
TC008959 Tribolium castaneum TC008959 I 0.698
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.698
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.697
KGM_16732 Danaus plexippus KGM_16732 I 0.697
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.697
MDOA009335 Musca domestica MDOA009335 I 0.697
CLEC011984 Cimex lectularius CLEC011984 I 0.697
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.697
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.697
NV23037 Nasonia vitripennis NV23037 I 0.697
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.697
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.696
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.696
L798_03377 Zootermopsis nevadensis L798_03377 I 0.696
PHUM035280 Pediculus humanus PHUM035280 I 0.695
AFAF011654 Anopheles farauti AFAF011654 I 0.695
GH18082 Drosophila grimshawi FBgn0125550 I 0.695
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.695
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.695
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.695
LCUP014592 Lucilia cuprina LCUP014592 I 0.694
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.694
HMEL011744 Heliconius melpomene HMEL011744 I 0.693
AAEL013752 Aedes aegypti AAEL013752 I 0.693
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.693
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.693
GL22063 Drosophila persimilis FBgn0159655 I 0.692
GI24583 Drosophila mojavensis FBgn0147305 I 0.692
CG9727 Drosophila melanogaster FBgn0037445 I 0.692
GD19544 Drosophila simulans FBgn0191039 I 0.692
GF16654 Drosophila ananassae FBgn0093675 I 0.692
GG10435 Drosophila erecta FBgn0102744 I 0.692
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.692
GM10553 Drosophila sechellia FBgn0165499 I 0.692
GJ22650 Drosophila virilis FBgn0209754 I 0.692
MCINX003210 Melitaea cinxia MCINX003210 I 0.692
GE24099 Drosophila yakuba FBgn0241238 I 0.692
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.692
GK13786 Drosophila willistoni FBgn0215794 I 0.692
RFX7 Echinops telfairi ENSETEG00000015037 I 0.688
Aan_R010941 Calypte anna Aan_R010941 I 0.688
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.688
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.686
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.684
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.684
ISCW001129 Ixodes scapularis ISCW001129 I 0.673
D915_00887 Fasciola hepatica D915_00887 I 0.670
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.669
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.667
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.660
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.659
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.659
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.658
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.654
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.654
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.652
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.652
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.652
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.652
PAAG_00480 Paracoccidioides sp lutzii PAAG_00480 I 0.651
J056_003501 Wallemia ichthyophaga J056_003501 N 0.651
BDDG_02784 Blastomyces dermatitidis BDDG_02784 I 0.651