CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RFX5
(
Monodelphis domestica
)
RFX
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02257 (RFX_DNA_binding)
IPR003150
ENSMODG00000018866
T318352_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RFX5
M03458_2.00
Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV
SELEX
Jolma et al.(2013)
RFX5_1
0.695
0.659
RFX5
M03459_2.00
Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_2
0.695
0.659
RFX5
M03460_2.00
Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_3
0.695
0.659
RFX5
M05725_2.00
Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1
0.695
0.659
RFX5
M05726_2.00
Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2
0.695
0.659
RFX5
M08009_2.00
Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM
ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford
0.695
0.659
RFX5
M08010_2.00
Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford
0.695
0.659
RFX5
M08011_2.00
Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford
0.695
0.659
RFX5
M08012_2.00
Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR
ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford
0.695
0.659
RFX5
M09364_2.00
Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB
Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A
0.695
0.659
RFX5
M09629_2.00
Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN
Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477
0.695
0.659
RFX5
M11249_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_03
0.695
0.659
RFX5
M11250_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_05
0.695
0.659
RFX5
M05727_2.00
Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1
0.695
0.659
RFX5
M05728_2.00
Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2
0.695
0.659
Rfx7
M00823_2.00
Mus musculus
GTYRCYRNSB
VSNYRGYRAC
PBM
Weirauch et al.(2013)
pTH3516
0.662
0.455
Rfx7
M00187_2.00
Mus musculus
BGTHDYYRNN
NNYRRHDACV
PBM
Badis et al.(2009)
Rfxdc2_3516
0.662
0.455
RFX7
M05729_2.00
Homo sapiens
BGTTRCYRY
RYRGYAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX
0.662
0.455
RFX7
M05730_2.00
Homo sapiens
BGTTGCYRB
VYRGCAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX
0.662
0.455
For this family, TFs with SR scores >
0.650
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000023540
RFX
89
132
YMYAYRWIRNHLEEHTATCLPKQDVYDAYRYCYSGIRRKTLVSM
Links
Other
RFX
family TFs
Other
Monodelphis domestica
TFs
164 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSMEUG00000011101
Macropus eugenii
ENSMEUG00000011101
I
0.700
ENSSHAG00000014366
Sarcophilus harrisii
ENSSHAG00000014366
I
0.700
ENSTSYG00000003230
Tarsius syrichta
ENSTSYG00000003230
I
0.696
RFX5
Felis catus
ENSFCAG00000005568
I
0.695
RFX5
Homo sapiens
ENSG00000143390
D
0.695
RFX5
Sus scrofa
ENSSSCG00000006625
I
0.695
ENSSTOG00000013246
Ictidomys tridecemlineatus
ENSSTOG00000013246
I
0.695
ENSDORG00000015967
Dipodomys ordii
ENSDORG00000015967
I
0.695
RFX5
Equus caballus
ENSECAG00000024774
I
0.695
RFX5
Tupaia belangeri
ENSTBEG00000006419
I
0.695
ENSNLEG00000010170
Nomascus leucogenys
ENSNLEG00000010170
I
0.695
RFX5
Sorex araneus
ENSSARG00000000750
I
0.695
RFX5
Pteropus vampyrus
ENSPVAG00000011680
I
0.695
RFX5
Otolemur garnettii
ENSOGAG00000008120
I
0.695
ENSOCUG00000011564
Oryctolagus cuniculus
ENSOCUG00000011564
I
0.695
ENSMPUG00000003735
Mustela putorius furo
ENSMPUG00000003735
I
0.695
ENSOARG00000020987
Ovis aries
ENSOARG00000020987
I
0.695
ENSMMUG00000013172
Macaca mulatta
ENSMMUG00000013172
I
0.695
ENSPANG00000005712
Papio anubis
ENSPANG00000005712
I
0.695
RFX5
Pan troglodytes
ENSPTRG00000001286
I
0.695
ENSPPYG00000000867
Pongo abelii
ENSPPYG00000000867
I
0.695
RFX5
Loxodonta africana
ENSLAFG00000030906
I
0.695
RFX5
Gorilla gorilla
ENSGGOG00000016795
I
0.695
RFX5
Echinops telfairi
ENSETEG00000013503
I
0.695
ENSCSAG00000001799
Chlorocebus sabaeus
ENSCSAG00000001799
I
0.695
ENSCPOG00000010643
Cavia porcellus
ENSCPOG00000010643
I
0.695
ENSP00000389130
Macaca fascicularis
ENSP00000389130
I
0.695
RFX5
Canis familiaris
ENSCAFG00000012661
I
0.695
RFX5
Bos taurus
ENSBTAG00000017580
I
0.695
RFX5
Callithrix jacchus
ENSCJAG00000007482
I
0.695
RFX5
Tursiops truncatus
ENSTTRG00000007023
I
0.695
ENSP00000389130-D1
Bos grunniens
ENSP00000389130-D1
I
0.695
Rfx5
Rattus norvegicus
ENSRNOG00000021012
I
0.693
Rfx5
Mus musculus
ENSMUSG00000005774
I
0.693
RFX5
Choloepus hoffmanni
ENSCHOG00000012900
I
0.691
ENSAPLG00000002900
Anas platyrhynchos
ENSAPLG00000002900
I
0.687
RFX5
Procavia capensis
ENSPCAG00000011056
I
0.686
ENSAMEG00000000695
Ailuropoda melanoleuca
ENSAMEG00000000695
I
0.686
Afo_R007667
Aptenodytes forsteri
Afo_R007667
I
0.685
Myotis_brandtii_RFX5_10008035
Myotis brandtii
Myotis_brandtii_RFX5_10008035
I
0.685
RFX5
Myotis lucifugus
ENSMLUG00000015218
I
0.685
RFX5
Gallus gallus
ENSGALG00000000836
I
0.684
Aan_R010941
Calypte anna
Aan_R010941
I
0.683
ENSMGAG00000001126
Meleagris gallopavo
ENSMGAG00000001126
I
0.682
rfx5
Xenopus tropicalis
XB-GENE-5942579
I
0.681
rfx5.S
Xenopus laevis
XB-GENE-6079297
I
0.681
ENSFALG00000010929
Ficedula albicollis
ENSFALG00000010929
I
0.680
Gfo_R003263
Geospiza fortis
Gfo_R003263
I
0.680
Alligator_sinensis_CCG020683.1
Alligator sinensis
Alligator_sinensis_CCG020683.1
I
0.679
ENSPSIG00000018073
Pelodiscus sinensis
ENSPSIG00000018073
I
0.674
ENSORLG00000001269
Oryzias latipes
ENSORLG00000001269
I
0.673
Ogr13052
Ophisaurus gracilis
Ogr13052
I
0.671
Cmyd_10007628
Chelonia mydas
Cmyd_10007628
I
0.671
csin102559
Clonorchis sinensis
csin102559
I
0.671
T265_11740
Opisthorchis viverrini
T265_11740
I
0.671
ENSXMAG00000006676
Xiphophorus maculatus
ENSXMAG00000006676
I
0.670
RFX7
Takifugu rubripes
ENSTRUG00000008008
I
0.670
ENSXMAG00000017295
Xiphophorus maculatus
ENSXMAG00000017295
I
0.670
ENSPFOG00000010592
Poecilia formosa
ENSPFOG00000010592
I
0.670
ENSONIG00000008334
Oreochromis niloticus
ENSONIG00000008334
I
0.670
RFX7
Tetraodon nigroviridis
ENSTNIG00000013706
I
0.670
RFX7
Oryzias latipes
ENSORLG00000005342
I
0.670
ENSGMOG00000004164
Gadus morhua
ENSGMOG00000004164
I
0.670
RFX7
Gasterosteus aculeatus
ENSGACG00000006090
I
0.670
rfx5
Tetraodon nigroviridis
ENSTNIG00000005388
I
0.669
ENSONIG00000003955
Oreochromis niloticus
ENSONIG00000003955
I
0.669
RFX7
Danio rerio
ENSDARG00000103691
I
0.669
ENSAMXG00000014807
Astyanax mexicanus
ENSAMXG00000014807
I
0.669
Pvit_04986
Pogona vitticeps
Pvit_04986
I
0.669
ENSAMXG00000008359
Astyanax mexicanus
ENSAMXG00000008359
I
0.669
ENSTRUG00000000177
Takifugu rubripes
ENSTRUG00000000177
I
0.669
ENSLOCG00000008459
Lepisosteus oculatus
ENSLOCG00000008459
I
0.668
rfx7
Danio rerio
ENSDARG00000077237
I
0.668
ENSACAG00000029645
Anolis carolinensis
ENSACAG00000029645
I
0.668
ENSAMXG00000020093
Astyanax mexicanus
ENSAMXG00000020093
I
0.668
rfx5
Danio rerio
ENSDARG00000063258
I
0.668
ENSLOCG00000013505
Lepisosteus oculatus
ENSLOCG00000013505
I
0.668
RFX5
Erinaceus europaeus
ENSEEUG00000010785
I
0.667
ENSSSCG00000024042
Sus scrofa
ENSSSCG00000024042
I
0.666
ENSPMAG00000005066
Petromyzon marinus
ENSPMAG00000005066
I
0.666
RFX7
Tupaia belangeri
ENSTBEG00000014637
I
0.665
ENSMEUG00000007846
Macropus eugenii
ENSMEUG00000007846
I
0.665
RFX7
Tursiops truncatus
ENSTTRG00000010051
I
0.665
ENSGMOG00000002477
Gadus morhua
ENSGMOG00000002477
I
0.664
RFX7
Felis catus
ENSFCAG00000029408
I
0.664
RFX7
Choloepus hoffmanni
ENSCHOG00000003451
I
0.662
Alligator_sinensis_CCG008945.1
Alligator sinensis
Alligator_sinensis_CCG008945.1
I
0.662
Afo_R011605
Aptenodytes forsteri
Afo_R011605
I
0.662
ENSCSAG00000011819
Chlorocebus sabaeus
ENSCSAG00000011819
I
0.662
ENSPANG00000017297
Papio anubis
ENSPANG00000017297
I
0.662
ENSONIG00000005780
Oreochromis niloticus
ENSONIG00000005780
I
0.662
RFX7
Otolemur garnettii
ENSOGAG00000031795
I
0.662
RFX7
Monodelphis domestica
ENSMODG00000008136
I
0.662
ENSCPOG00000005366
Cavia porcellus
ENSCPOG00000005366
I
0.662
RFX7
Canis familiaris
ENSCAFG00000016029
I
0.662
Aan_R011989
Calypte anna
Aan_R011989
I
0.662
RFX7
Bos taurus
ENSBTAG00000000565
I
0.662
ENSAMEG00000018368
Ailuropoda melanoleuca
ENSAMEG00000018368
I
0.662
Rfx7
Mus musculus
ENSMUSG00000037674
D
0.662
ENSOARG00000020885
Ovis aries
ENSOARG00000020885
I
0.662
Pvit_17399
Pogona vitticeps
Pvit_17399
I
0.662
RFX7
Anolis carolinensis
ENSACAG00000008482
I
0.662
RFX7
Ornithorhynchus anatinus
ENSOANG00000008526
I
0.662
Gfo_R004305
Geospiza fortis
Gfo_R004305
I
0.662
ENSMPUG00000002204
Mustela putorius furo
ENSMPUG00000002204
I
0.662
ENSMMUP00000033587
Macaca fascicularis
ENSMMUP00000033587
I
0.662
RFX7
Dasypus novemcinctus
ENSDNOG00000044983
I
0.662
ENSAPLG00000005911
Anas platyrhynchos
ENSAPLG00000005911
I
0.662
RFX7
Oryctolagus cuniculus
ENSOCUG00000013678
I
0.662
ENSP00000397644-D1
Bos grunniens
ENSP00000397644-D1
I
0.662
Brh_R008414
Buceros rhinoceros
Brh_R008414
I
0.662
RFX7
Vicugna pacos
ENSVPAG00000012402
I
0.662
ENSTSYG00000002441
Tarsius syrichta
ENSTSYG00000002441
I
0.662
RFX7
Pan troglodytes
ENSPTRG00000007104
I
0.662
RFX7
Sorex araneus
ENSSARG00000010801
I
0.662
ENSSHAG00000003875
Sarcophilus harrisii
ENSSHAG00000003875
I
0.662
RFX7
Homo sapiens
ENSG00000181827
D
0.662
RFX7
Meleagris gallopavo
ENSMGAG00000005745
I
0.662
ENSLACG00000015878
Latimeria chalumnae
ENSLACG00000015878
I
0.662
RFX7
Procavia capensis
ENSPCAG00000004974
I
0.662
RFX7
Loxodonta africana
ENSLAFG00000018745
I
0.662
ENSPPYG00000006502
Pongo abelii
ENSPPYG00000006502
I
0.662
ENSPSIG00000014731
Pelodiscus sinensis
ENSPSIG00000014731
I
0.662
ENSFALG00000012087
Ficedula albicollis
ENSFALG00000012087
I
0.662
Rfx7
Rattus norvegicus
ENSRNOG00000060367
I
0.662
RFX7
Macaca mulatta
ENSMMUG00000017801
I
0.662
RFX7
Equus caballus
ENSECAG00000002379
I
0.662
RFX7
Erinaceus europaeus
ENSEEUG00000013718
I
0.662
ENSNLEG00000006658
Nomascus leucogenys
ENSNLEG00000006658
I
0.662
RFX7
Taeniopygia guttata
ENSTGUG00000006356
I
0.662
RFX7
Ochotona princeps
ENSOPRG00000003155
I
0.661
Myotis_brandtii_RFX7_10006263
Myotis brandtii
Myotis_brandtii_RFX7_10006263
I
0.661
RFX7
Myotis lucifugus
ENSMLUG00000028676
I
0.661
ECANG7_06078
Echinococcus canadensis
ECANG7_06078
I
0.661
D915_00887
Fasciola hepatica
D915_00887
I
0.661
rfx7
Xenopus tropicalis
XB-GENE-1008447
I
0.661
HNAJ_0001122601
Hymenolepis nana
HNAJ_0001122601
I
0.661
TsM_000553100
Taenia solium
TsM_000553100
I
0.661
TTAC_0000027401
Hydatigera taeniaeformis
TTAC_0000027401
I
0.661
EmuJ_001055400
Echinococcus multilocularis
EmuJ_001055400
I
0.661
RFX7
Pteropus vampyrus
ENSPVAG00000005381
I
0.661
SCUD_0001838101
Schistosoma curassoni
SCUD_0001838101
I
0.661
A_01977
Schistosoma haematobium
A_01977
I
0.660
CGI_10006904
Crassostrea gigas
CGI_10006904
I
0.660
rfx7
Takifugu rubripes
ENSTRUG00000017897
I
0.660
Ogr11408
Ophisaurus gracilis
Ogr11408
I
0.660
HmN_000672900
Hymenolepis microstoma
HmN_000672900
I
0.660
Smp_040350
Schistosoma mansoni
Smp_040350
I
0.660
SROB_0001335501
Schistosoma rodhaini
SROB_0001335501
I
0.660
HDID_0000095701
Hymenolepis diminuta
HDID_0000095701
I
0.660
Sjc_0019090
Schistosoma japonicum
Sjc_0019090
I
0.660
rfx7
Oryzias latipes
ENSORLG00000008583
I
0.659
ECPE_0001841201
Echinostoma caproni
ECPE_0001841201
I
0.659
Ocbimv22017482m.g
Octopus bimaculoides
Ocbimv22017482m.g
I
0.659
ENSPFOG00000002938
Poecilia formosa
ENSPFOG00000002938
I
0.658
Cmyd_10014217
Chelonia mydas
Cmyd_10014217
I
0.658
rfx7
Tetraodon nigroviridis
ENSTNIG00000009322
I
0.655
rfx7
Gasterosteus aculeatus
ENSGACG00000015838
I
0.655
ENSXMAG00000003651
Xiphophorus maculatus
ENSXMAG00000003651
I
0.655
LotgiG138119
Lottia gigantea
LotgiG138119
I
0.654
ISCW001129
Ixodes scapularis
ISCW001129
I
0.653
e_gw.237.152.1
Branchiostoma floridae
e_gw.237.152.1
I
0.653
SMU15027042
Schmidtea mediterranea
SMU15027042
I
0.652
tetur02g00620
Tetranychus urticae
tetur02g00620
I
0.652