Sjc_0019090 (Schistosoma japonicum)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Sjc_0019090 T319074_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.696 0.536
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.696 0.536
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.696 0.536
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.696 0.536
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.691 0.536
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.691 0.536
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.691 0.536
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.691 0.536
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.691 0.536
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.691 0.536
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.691 0.536
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.691 0.536
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.691 0.536
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.691 0.536
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.691 0.536
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.691 0.536
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.691 0.536
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.691 0.536
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.691 0.536
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CPRT0000001788 RFX 718 786

Links

Other RFX family TFs
Other Schistosoma japonicum TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.781
A_01977 Schistosoma haematobium A_01977 I 0.781
Smp_040350 Schistosoma mansoni Smp_040350 I 0.781
csin102559 Clonorchis sinensis csin102559 I 0.772
T265_11740 Opisthorchis viverrini T265_11740 I 0.772
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.770
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.770
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.770
TsM_000553100 Taenia solium TsM_000553100 I 0.770
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.760
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.760
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.757
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.724
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.721
CapteG131555 Capitella teleta CapteG131555 I 0.715
LotgiG138119 Lottia gigantea LotgiG138119 I 0.713
GB49419 Apis mellifera GB49419 I 0.709
ACEP24602 Atta cephalotes ACEP24602 I 0.709
SINV24627 Solenopsis invicta SINV24627 I 0.709
NV23037 Nasonia vitripennis NV23037 I 0.709
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.709
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.705
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.704
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.704
ISCW001129 Ixodes scapularis ISCW001129 I 0.703
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.702
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.702
L798_03377 Zootermopsis nevadensis L798_03377 I 0.702
RFX7 Oryzias latipes ENSORLG00000005342 I 0.702
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.702
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.702
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.702
ADAC008404 Anopheles darlingi ADAC008404 I 0.701
ASIS020285 Anopheles sinensis ASIS020285 I 0.701
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.701
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.701
AMEM009524 Anopheles merus AMEM009524 I 0.701
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.701
AGAP013226 Anopheles gambiae AGAP013226 I 0.701
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.701
rfx7 Danio rerio ENSDARG00000077237 I 0.701
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.701
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.701
AMEC002251 Anopheles melas AMEC002251 I 0.701
AMIN003942 Anopheles minimus AMIN003942 I 0.701
ACUA017169 Anopheles culicifacies ACUA017169 I 0.701
ACOM036649 Anopheles coluzzii ACOM036649 I 0.701
AFUN011072 Anopheles funestus AFUN011072 I 0.701
AEPI006624 Anopheles epiroticus AEPI006624 I 0.701
RFX7 Danio rerio ENSDARG00000103691 I 0.701
ACHR008891 Anopheles christyi ACHR008891 I 0.701
ADIR010232 Anopheles dirus ADIR010232 I 0.701
AALB008384 Anopheles albimanus AALB008384 I 0.701
AATE016751 Anopheles atroparvus AATE016751 I 0.701
AARA004226 Anopheles arabiensis AARA004226 I 0.701
AFAF011654 Anopheles farauti AFAF011654 I 0.699
MDOA009335 Musca domestica MDOA009335 I 0.699
HMEL011744 Heliconius melpomene HMEL011744 I 0.699
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.699
TC008959 Tribolium castaneum TC008959 I 0.698
AAEL013752 Aedes aegypti AAEL013752 I 0.698
KGM_16732 Danaus plexippus KGM_16732 I 0.698
LCUP014592 Lucilia cuprina LCUP014592 I 0.698
MCINX003210 Melitaea cinxia MCINX003210 I 0.698
GH18082 Drosophila grimshawi FBgn0125550 I 0.697
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.697
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.697
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.697
PHUM035280 Pediculus humanus PHUM035280 I 0.697
CG9727 Drosophila melanogaster FBgn0037445 I 0.696
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.696
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.696
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.696
GF16654 Drosophila ananassae FBgn0093675 I 0.696
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.696
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.696
RFX7 Sorex araneus ENSSARG00000010801 I 0.696
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.696
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.696
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.696
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.696
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.696
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.696
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.696
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.696
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.696
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.696
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.696
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.696
Aan_R011989 Calypte anna Aan_R011989 I 0.696
GE24099 Drosophila yakuba FBgn0241238 I 0.696
GK13786 Drosophila willistoni FBgn0215794 I 0.696
GL22063 Drosophila persimilis FBgn0159655 I 0.696
GI24583 Drosophila mojavensis FBgn0147305 I 0.696
GM10553 Drosophila sechellia FBgn0165499 I 0.696
GD19544 Drosophila simulans FBgn0191039 I 0.696
GJ22650 Drosophila virilis FBgn0209754 I 0.696
GG10435 Drosophila erecta FBgn0102744 I 0.696
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.696
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.696
Rfx7 Mus musculus ENSMUSG00000037674 D 0.696
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.696
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.696
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.696
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.696
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.696
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.696
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.696
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.696
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.696
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.696
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.696
RFX7 Homo sapiens ENSG00000181827 D 0.696
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.696
RFX7 Bos taurus ENSBTAG00000000565 I 0.696
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.696
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.696
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.696
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.696
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.696
RFX7 Equus caballus ENSECAG00000002379 I 0.696
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.696
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.696
RFX7 Procavia capensis ENSPCAG00000004974 I 0.696
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.696
RFX7 Canis familiaris ENSCAFG00000016029 I 0.696
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.696
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.695
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.695
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.695
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.695
CLEC011984 Cimex lectularius CLEC011984 I 0.695
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.695
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.695
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.695
rfx7 Oryzias latipes ENSORLG00000008583 I 0.695
D915_00887 Fasciola hepatica D915_00887 I 0.695
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.695
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.694
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.693
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.693
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.693
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.692
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.692
RFX5 Equus caballus ENSECAG00000024774 I 0.691
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.691
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.691
RFX5 Sorex araneus ENSSARG00000000750 I 0.691
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.691
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.691
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.691
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.691
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.691
RFX5 Homo sapiens ENSG00000143390 D 0.691
RFX5 Felis catus ENSFCAG00000005568 I 0.691
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.691
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.691
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.691
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.691
RFX5 Echinops telfairi ENSETEG00000013503 I 0.691
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.691
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.691
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.691
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.691
RFX5 Canis familiaris ENSCAFG00000012661 I 0.691
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.691
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.691
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.691
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.691
RFX5 Sus scrofa ENSSSCG00000006625 I 0.691
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.691
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.691
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.691
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.691
RFX5 Bos taurus ENSBTAG00000017580 I 0.691
Rfx5 Mus musculus ENSMUSG00000005774 I 0.690
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.690
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.690
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.690
RFX7 Felis catus ENSFCAG00000029408 I 0.690
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.690
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.689
rfx5 Danio rerio ENSDARG00000063258 I 0.689
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.689
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.689
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.689
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.689
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.687
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.687
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.687
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.686
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.685
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.685
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.685
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.685
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.684
RFX5 Gallus gallus ENSGALG00000000836 I 0.684
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.684
RFX7 Echinops telfairi ENSETEG00000015037 I 0.683
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.683
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.682
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.682
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.682
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.681
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.681
RFX5 Procavia capensis ENSPCAG00000011056 I 0.681
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.681
Aan_R010941 Calypte anna Aan_R010941 I 0.681
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.680
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.675
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.671
ECPE_0001391801 Echinostoma caproni ECPE_0001391801 N 0.664
TriadG51266 Trichoplax adhaerens TriadG51266 I 0.663
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.661
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.660
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.660
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.659
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.658
KAFR_0H03130 Kazachstania africana KAFR_0H03130 I 0.658
sak1 Schizosaccharomyces pombe SPAC3G9.14 I 0.656
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.654
SPU_002235 Strongylocentrotus purpuratus SPU_002235 I 0.653
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.653
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.652
BDDG_02784 Blastomyces dermatitidis BDDG_02784 I 0.652
TSTA_119980 Talaromyces stipitatus TSTA_119980 I 0.652
PMAA_084960 Penicillium marneffei PMAA_084960 I 0.652
PMAA_084960 Talaromyces marneffei PMAA_084960 I 0.652
TriadG51992 Trichoplax adhaerens TriadG51992 I 0.652
tetur05g07120 Tetranychus urticae tetur05g07120 N 0.652
PAAG_00480 Paracoccidioides sp lutzii PAAG_00480 I 0.651
PABG_06744 Paracoccidioides brasiliensis PABG_06744 I 0.651
PredSwiss_CON653.4 Pneumocystis carinii PredSwiss_CON653.4 I 0.651
PNEG_02893 Pneumocystis murina PNEG_02893 I 0.651
PredSwiss_ASS2010_3110.1 Pneumocystis carinii PredSwiss_ASS2010_3110.1 I 0.651