fgenesh2_kg.7__195__AT4G39780.1 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 fgenesh2_kg.7__195__AT4G39780.1 T001698_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.845 0.920
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.832 0.900
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.832 0.900
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.708 0.840
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.708 0.840
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.680 0.820
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.680 0.820
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.677 0.640
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.7__195__AT4G39780.1 AP2 96 147

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

459 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0000492601 Angiostrongylus costaricensis ACOC_0000492601 I
ANCCEY_07914 Ancylostoma ceylanicum ANCCEY_07914 I
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I
augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 I
CBG06599 Caenorhabditis briggsae CBG06599 I
CBG06609 Caenorhabditis briggsae CBG06609 I
CBG09567 Caenorhabditis briggsae CBG09567 I
CBG20727 Caenorhabditis briggsae CBG20727 I
CBG20729 Caenorhabditis briggsae CBG20729 I
CBG22870 Caenorhabditis briggsae CBG22870 I
CBN21486 Caenorhabditis brenneri CBN21486 I
CBN23838 Caenorhabditis brenneri CBN23838 I
CBN28290 Caenorhabditis brenneri CBN28290 I
CJA09697 Caenorhabditis japonica CJA09697 I
CRE15644 Caenorhabditis remanei CRE15644 I
CRE15675 Caenorhabditis remanei CRE15675 I
CRE30948 Caenorhabditis remanei CRE30948 I
GPLIN_000282900 Globodera pallida GPLIN_000282900 I
HCOI00483700 Haemonchus contortus HCOI00483700 I
HCOI01190000 Haemonchus contortus HCOI01190000 I
HPBE_0001646201 Heligmosomoides bakeri HPBE_0001646201 I
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I
HPLM_0000974301 Haemonchus placei HPLM_0000974301 I
HPLM_0000974401 Haemonchus placei HPLM_0000974401 I
L596_g14588 Steinernema carpocapsae L596_g14588 I
L889_g6696 Steinernema feltiae L889_g6696 I
L892_g14834 Steinernema scapterisci L892_g14834 N
L892_g2782 Steinernema scapterisci L892_g2782 I
L898_g12798 Steinernema monticolum L898_g12798 I
L898_g3512 Steinernema monticolum L898_g3512 I
L898_g4018 Steinernema monticolum L898_g4018 N
MhA1_Contig1192.frz3.gene3 Meloidogyne hapla MhA1_Contig1192.frz3.gene3 I
Minc14668 Meloidogyne incognita Minc14668 I
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I
NBR_0001834701 Nippostrongylus brasiliensis NBR_0001834701 I
SVUK_0002058501 Strongylus vulgaris SVUK_0002058501 I
nhr-54 Caenorhabditis elegans WBGene00003644 I
nhr-170 Caenorhabditis elegans WBGene00008309 I
nhr-231 Caenorhabditis elegans WBGene00012449 I
nhr-232 Caenorhabditis elegans WBGene00012494 D
nhr-142 Caenorhabditis elegans WBGene00018430 D