Sakowv30031408m.g (Saccoglossus kowalevskii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Sakowv30031408m.g T048924_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf21
M01746_2.00 		Mus musculus
RMCAKMTGK
MCAKMTGKY		 PBM
Weirauch et al.(2014)
pTH5087 		0.851 0.904
Tcf21
M02819_2.00 		Mus musculus
VNAACAGCTGTTVN
NBAACAGCTGTTNB		 SELEX
Jolma et al.(2013)
Tcf21_1 		0.851 0.904
TCF21
M04092_2.00 		Homo sapiens
BAACAGCTGBYN
NRVCAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_1 		0.851 0.904
TCF21
M04093_2.00 		Homo sapiens
NRCCATATGKYV
BRMCATATGGYN		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_2 		0.851 0.904
TCF21
M04094_2.00 		Homo sapiens
BAACAGCTGTYV
BRACAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_1 		0.851 0.904
TCF21
M04095_2.00 		Homo sapiens
BACCATATGKYV
BRMCATATGGTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_2 		0.851 0.904
Msc
M01730_2.00 		Mus musculus
NVCRKMYGBN
NVCRKMYGBN		 PBM
Weirauch et al.(2014)
pTH5112 		0.851 0.885
MSC
M02801_2.00 		Homo sapiens
AACAGCTGTT
AACAGCTGTT		 SELEX
Jolma et al.(2013)
MSC_1 		0.851 0.885
MSC
M04183_2.00 		Homo sapiens
NRMCAGMTGBYN
NRVCAKCTGKYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_1 		0.851 0.885
MSC
M04184_2.00 		Homo sapiens
NRVCAYVTGBYN
NRVCABRTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_2 		0.851 0.885
MSC
M04187_2.00 		Homo sapiens
NRMCAGCTGBYV
BRVCAGCTGKYN		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_1 		0.851 0.885
MSC
M04188_2.00 		Homo sapiens
BRMCATATGKYN
NRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_2 		0.851 0.885
MSC
M04185_2.00 		Homo sapiens
NRVCAGCTGBBN
NVVCAGCTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_1 		0.851 0.885
MSC
M04186_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_2 		0.851 0.885
MSC
M04189_2.00 		Homo sapiens
BRACAGCTGTYV
BRACAGCTGTYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_1 		0.851 0.885
MSC
M04190_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_2 		0.851 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23939531_peptide bHLH 45 97

Links

Other bHLH family TFs
Other Saccoglossus kowalevskii TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30106.m000672 Ricinus communis 30106.m000672 I
FAR1 Arabidopsis thaliana AT4G15090 D
Bo6g054750 Brassica oleracea Bo6g054750 I
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I
Bra040696 Brassica rapa Bra040696 I
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I
Carubv10004178m.g Capsella rubella Carubv10004178m.g I
Carubv10012703m.g Capsella rubella Carubv10012703m.g I
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I
Cucsa.180080 Cucumis sativus Cucsa.180080 I
Cucsa.180090 Cucumis sativus Cucsa.180090 I
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I
GLYMA04G14850 Glycine max GLYMA04G14850 I
GLYMA06G47210 Glycine max GLYMA06G47210 I
GLYMA10G40510 Glycine max GLYMA10G40510 I
GLYMA20G26810 Glycine max GLYMA20G26810 I
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I
MDP0000286803 Malus domestica MDP0000286803 I
mgf008053m Mimulus guttatus mgf008053m I
PK04639.1 Cannabis sativa PK04639.1 I
Pm014858 Prunus mume Pm014858 I
Pm014859 Prunus mume Pm014859 I
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I
TCM_002030 Theobroma cacao TCM_002030 I
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I
FAR1 Vitis vinifera VIT_03s0017g01810 I