msc (Xenopus tropicalis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 XB-GENE-978233 T051933_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Msc
M01730_2.00 		Mus musculus
NVCRKMYGBN
NVCRKMYGBN		 PBM
Weirauch et al.(2014)
pTH5112 		0.914 0.981
MSC
M02801_2.00 		Homo sapiens
AACAGCTGTT
AACAGCTGTT		 SELEX
Jolma et al.(2013)
MSC_1 		0.914 0.981
MSC
M04183_2.00 		Homo sapiens
NRMCAGMTGBYN
NRVCAKCTGKYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_1 		0.914 0.981
MSC
M04184_2.00 		Homo sapiens
NRVCAYVTGBYN
NRVCABRTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_2 		0.914 0.981
MSC
M04187_2.00 		Homo sapiens
NRMCAGCTGBYV
BRVCAGCTGKYN		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_1 		0.914 0.981
MSC
M04188_2.00 		Homo sapiens
BRMCATATGKYN
NRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_2 		0.914 0.981
MSC
M04185_2.00 		Homo sapiens
NRVCAGCTGBBN
NVVCAGCTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_1 		0.914 0.981
MSC
M04186_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_2 		0.914 0.981
MSC
M04189_2.00 		Homo sapiens
BRACAGCTGTYV
BRACAGCTGTYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_1 		0.914 0.981
MSC
M04190_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_2 		0.914 0.981
Tcf21
M01746_2.00 		Mus musculus
RMCAKMTGK
MCAKMTGKY		 PBM
Weirauch et al.(2014)
pTH5087 		0.914 0.962
Tcf21
M02819_2.00 		Mus musculus
VNAACAGCTGTTVN
NBAACAGCTGTTNB		 SELEX
Jolma et al.(2013)
Tcf21_1 		0.914 0.962
TCF21
M04092_2.00 		Homo sapiens
BAACAGCTGBYN
NRVCAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_1 		0.914 0.962
TCF21
M04093_2.00 		Homo sapiens
NRCCATATGKYV
BRMCATATGGYN		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_2 		0.914 0.962
TCF21
M04094_2.00 		Homo sapiens
BAACAGCTGTYV
BRACAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_1 		0.914 0.962
TCF21
M04095_2.00 		Homo sapiens
BACCATATGKYV
BRMCATATGGTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_2 		0.914 0.962
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI35362 bHLH 82 134

Links

Other bHLH family TFs
Other Xenopus tropicalis TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30190.m010807 Ricinus communis 30190.m010807 I 0.000
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.000
HMGB13 Arabidopsis thaliana AT4G11080 D 0.000
HMGB6 Arabidopsis thaliana AT4G23800 I 0.000
Bo1g037180 Brassica oleracea Bo1g037180 I 0.000
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.000
Bra013731 Brassica rapa Bra013731 I 0.000
Bra035256 Brassica rapa Bra035256 I 0.000
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.000
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.000
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.000
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.000
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.000
Ca_05811 Cicer arietinum Ca_05811 I 0.000
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.000
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.000
Cla011101 Citrullus lanatus Cla011101 I 0.000
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.000
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.000
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.000
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.000
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.000
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.000
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.000
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.000
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.000
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.000
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.000
MDP0000268093 Malus domestica MDP0000268093 I 0.000
mgf015439m Mimulus guttatus mgf015439m I 0.000
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.000
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.000
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.000
PK10992.1 Cannabis sativa PK10992.1 I 0.000
Pm024077 Prunus mume Pm024077 I 0.000
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.000
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.000
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.000
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.000
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.000
TCM_016416 Theobroma cacao TCM_016416 I 0.000
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.000
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.000
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.000