OB03G42170 (Oryza brachyantha)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OB03G42170 T124582_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.826
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.826
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.784 0.826
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.779 0.804
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.777 0.783
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.777 0.783
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.777 0.783
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.765 0.696
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.765 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB03G42170.1 C2H2 ZF 84 106
OB03G42170.1 C2H2 ZF 146 168

Links

Other C2H2 ZF family TFs
Other Oryza brachyantha TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28152.m000908 Ricinus communis 28152.m000908 I 0.779
30170.m013751 Ricinus communis 30170.m013751 I 0.777
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.771
ZAT10 Arabidopsis thaliana AT1G27730 D 0.777
ZAT4 Arabidopsis thaliana AT2G45120 D 0.765
AZF2 Arabidopsis thaliana AT3G19580 D 0.779
ZAT9 Arabidopsis thaliana AT3G60580 D 0.765
ZAT6 Arabidopsis thaliana AT5G04340 D 0.784
AZF3 Arabidopsis thaliana AT5G43170 I 0.773
AZF1 Arabidopsis thaliana AT5G67450 D 0.787
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.773
BGIOSGA026045 Oryza indica BGIOSGA026045 N 0.778
Bo1g081350 Brassica oleracea Bo1g081350 I 0.792
Bo1g113530 Brassica oleracea Bo1g113530 I 0.784
Bo2g168030 Brassica oleracea Bo2g168030 I 0.787
Bo3g037560 Brassica oleracea Bo3g037560 I 0.765
Bo3g142840 Brassica oleracea Bo3g142840 I 0.777
Bo4g195370 Brassica oleracea Bo4g195370 I 0.765
Bo5g052290 Brassica oleracea Bo5g052290 I 0.758
Bo5g113850 Brassica oleracea Bo5g113850 I 0.784
Bo7g048650 Brassica oleracea Bo7g048650 I 0.782
Bo7g065200 Brassica oleracea Bo7g065200 I 0.779
Bo9g019120 Brassica oleracea Bo9g019120 I 0.787
Bo9g181170 Brassica oleracea Bo9g181170 I 0.784
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.765
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.782
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.784
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.784
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.765
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.783
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.784
Bra000372 Brassica rapa Bra000372 I 0.765
Bra009464 Brassica rapa Bra009464 I 0.784
Bra010922 Brassica rapa Bra010922 I 0.777
Bra012914 Brassica rapa Bra012914 I 0.792
Bra018817 Brassica rapa Bra018817 I 0.778
Bra022436 Brassica rapa Bra022436 I 0.784
Bra029985 Brassica rapa Bra029985 I 0.792
Bra031834 Brassica rapa Bra031834 I 0.787
Bra032845 Brassica rapa Bra032845 I 0.758
Bra033666 Brassica rapa Bra033666 I 0.779
Bra037845 Brassica rapa Bra037845 I 0.787
Bra038219 Brassica rapa Bra038219 I 0.784
Bra040325 Brassica rapa Bra040325 I 0.765
BRADI1G22940 Brachypodium distachyon BRADI1G22940 N 0.772
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.765
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.765
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.784
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.779
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.779
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.784
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.765
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.765
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.778
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.774
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.784
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.779
Ca_01586 Cicer arietinum Ca_01586 I 0.784
Ca_18364 Cicer arietinum Ca_18364 I 0.784
Ca_23672 Cicer arietinum Ca_23672 I 0.759
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.784
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.784
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.784
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.784
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.784
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.759
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.784
Cla022966 Citrullus lanatus Cla022966 I 0.771
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.784
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.771
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.784
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.759
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.760
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.787
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.777
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.784
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.765
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.784
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.759
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.759
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.759
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.784
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.784
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.784
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.784
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.759
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.784
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.760
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.784
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.784
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.784
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.784
GRMZM2G089557 Zea mays GRMZM2G089557 N 0.772
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.765
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.786
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.764
LPERR03G19200 Leersia perrieri LPERR03G19200 I 0.773
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.764
LPERR07G17860 Leersia perrieri LPERR07G17860 N 0.772
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.759
MDP0000198015 Malus domestica MDP0000198015 I 0.784
MDP0000319225 Malus domestica MDP0000319225 I 0.784
MDP0000573176 Malus domestica MDP0000573176 I 0.784
MDP0000762756 Malus domestica MDP0000762756 I 0.784
mgf006006m Mimulus guttatus mgf006006m I 0.787
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.759
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.783
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.784
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.784
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.765
OB03G31780 Oryza brachyantha OB03G31780 I 0.773
OBART03G22570 Oryza barthii OBART03G22570 I 0.773
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.773
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.773
ONIVA07G18980 Oryza nivara ONIVA07G18980 N 0.778
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.784
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.784
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.759
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.773
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.773
ORUFI07G21440 Oryza rufipogon ORUFI07G21440 N 0.778
OS03G0437200 Oryza sativa OS03G0437200 I 0.773
OS07G0588600 Oryza sativa OS07G0588600 N 0.778
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.779
PGSC0003DMG400008327 Solanum tuberosum PGSC0003DMG400008327 I 0.761
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.784
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.763
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.772
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.779
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I 0.769
PK10188.1 Cannabis sativa PK10188.1 I 0.784
Pm005390 Prunus mume Pm005390 I 0.784
Pm021284 Prunus mume Pm021284 I 0.784
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.783
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.759
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.779
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.784
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.784
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.784
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.779
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.779
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.758
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.759
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.784
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.765
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.784
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.773
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.777
TCM_000780 Theobroma cacao TCM_000780 I 0.777
TCM_007214 Theobroma cacao TCM_007214 I 0.784
TCM_034720 Theobroma cacao TCM_034720 I 0.784
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.765
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.792
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.784
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.784
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.778
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.782
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.759
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.784