ALUE_0001497801 (Ascaris lumbricoides)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 ALUE_0001497801 T232848_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NOBOX
M09135_2.00 		Homo sapiens
HTAATTRVB
VBYAATTAD		 Misc
Kulakovskiy et al.(2013)
NOBOX_HUMAN.H11MO.0.C 		0.667 0.377
HESX1
M03187_2.00 		Homo sapiens
NHTAATTRVH
DBYAATTADN		 SELEX
Jolma et al.(2013)
HESX1_1 		0.667 0.213
HESX1
M03188_2.00 		Homo sapiens
NTAATTRGYAATTAD
HTAATTRCYAATTAN		 SELEX
Jolma et al.(2013)
HESX1_2 		0.667 0.213
HESX1
M05227_2.00 		Homo sapiens
DYAATTRV
BYAATTRH		 SELEX
Yin et al.(2017)
HESX1_FL_HT-SELEX 		0.667 0.213
HESX1
M05228_2.00 		Homo sapiens
NYAATTRD
HYAATTRN		 SELEX
Yin et al.(2017)
HESX1_FL_Methyl-HT-SELEX 		0.667 0.213
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ALUE_0001497801-mRNA-1 Homeodomain 136 179
ALUE_0001497801-mRNA-1 Homeodomain 205 221

Links

Other Homeodomain family TFs
Other Ascaris lumbricoides TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00041p00167350 Amborella trichopoda AMTR_s00041p00167350 N 0.000
BGIOSGA027713 Oryza indica BGIOSGA027713 N 0.000
Bo1g006000 Brassica oleracea Bo1g006000 N 0.000
Bo4g145670 Brassica oleracea Bo4g145670 I 0.000
Bo8g102040 Brassica oleracea Bo8g102040 I 0.000
Bra011655 Brassica rapa Bra011655 N 0.000
Bra030325 Brassica rapa Bra030325 I 0.000
Bra031159 Brassica rapa Bra031159 I 0.000
BRADI2G07090 Brachypodium distachyon BRADI2G07090 N 0.000
BRADI3G01960 Brachypodium distachyon BRADI3G01960 N 0.000
Cagra.3126s0019 Capsella grandiflora Cagra.3126s0019 N 0.000
Carubv10015336m.g Capsella rubella Carubv10015336m.g N 0.000
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.000
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.000
Ca_11038 Cicer arietinum Ca_11038 N 0.000
chr3.CM0112.180.nd Lotus japonicus chr3.CM0112.180.nd N 0.000
chr6.CM0045.280.nd Lotus japonicus chr6.CM0045.280.nd N 0.000
Cla016088 Citrullus lanatus Cla016088 N 0.000
Cucsa.381750 Cucumis sativus Cucsa.381750 N 0.000
estExt_gwp_gw1.C_410063 Physcomitrella patens estExt_gwp_gw1.C_410063 N 0.000
estExt_gwp_gw1.C_640002 Physcomitrella patens estExt_gwp_gw1.C_640002 N 0.000
Eucgr.I01395 Eucalyptus grandis Eucgr.I01395 N 0.000
EuGene.0200010100 Micromonas sp RCC299 EuGene.0200010100 N 0.000
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.000
gene07618-v1.0-hybrid Fragaria vesca gene07618-v1.0-hybrid N 0.000
GLYMA11G11290 Glycine max GLYMA11G11290 N 0.000
GLYMA12G03470 Glycine max GLYMA12G03470 N 0.000
Gorai.002G003500 Gossypium raimondii Gorai.002G003500 N 0.000
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.000
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.000
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I 0.000
Gorai.008G062500 Gossypium raimondii Gorai.008G062500 N 0.000
GRMZM2G389768 Zea mays GRMZM2G389768 N 0.000
IGS.gm_9_00317 Chlorella NC64A IGS.gm_9_00317 N 0.000
LPERR08G02000 Leersia perrieri LPERR08G02000 N 0.000
Lus10005066.g Linum usitatissimum Lus10005066.g N 0.000
Lus10027839.g Linum usitatissimum Lus10027839.g N 0.000
MDP0000155077 Malus domestica MDP0000155077 N 0.000
MDP0000202739 Malus domestica MDP0000202739 N 0.000
MDP0000225222 Malus domestica MDP0000225222 N 0.000
mgf001526m Mimulus guttatus mgf001526m N 0.000
mgf014458m Mimulus guttatus mgf014458m N 0.000
mgf015980m Mimulus guttatus mgf015980m I 0.000
OGLUM08G01920 Oryza glumaepatula OGLUM08G01920 N 0.000
OMERI08G01940 Oryza meridionalis OMERI08G01940 N 0.000
ONIVA08G01720 Oryza nivara ONIVA08G01720 N 0.000
ORGLA08G0012100 Oryza glaberrima ORGLA08G0012100 N 0.000
ORUFI08G02050 Oryza rufipogon ORUFI08G02050 N 0.000
OS08G0129200 Oryza sativa OS08G0129200 N 0.000
Pavir.Ab00211 Panicum virgatum Pavir.Ab00211 N 0.000
Pavir.J33226 Panicum virgatum Pavir.J33226 N 0.000
Pavir.J33349 Panicum virgatum Pavir.J33349 N 0.000
PGSC0003DMG400001590 Solanum tuberosum PGSC0003DMG400001590 N 0.000
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.000
Pm020837 Prunus mume Pm020837 I 0.000
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N 0.000
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.000
SapurV1A.0117s0150 Salix purpurea SapurV1A.0117s0150 N 0.000
Sb04g001720 Sorghum bicolor Sb04g001720 N 0.000
SELMODRAFT_186937 Selaginella moellendorffii SELMODRAFT_186937 N 0.000
SELMODRAFT_187582 Selaginella moellendorffii SELMODRAFT_187582 N 0.000
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.000
Thhalv10022795m.g Eutrema salsugineum Thhalv10022795m.g N 0.000
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.000
VIT_04s0023g03520 Vitis vinifera VIT_04s0023g03520 N 0.000