Pavir.J06554 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J06554 T289338_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J06554.1.p Myb 7 35

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004627 Ricinus communis 29929.m004627 I
30138.m003942 Ricinus communis 30138.m003942 I
30147.m014478 Ricinus communis 30147.m014478 I
30174.m009082 Ricinus communis 30174.m009082 I
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I
SPL13A Arabidopsis thaliana AT5G50570 I
SPL13A Arabidopsis thaliana AT5G50670 D
BGIOSGA005075 Oryza indica BGIOSGA005075 I
Bo3g024180 Brassica oleracea Bo3g024180 I
Bo9g097630 Brassica oleracea Bo9g097630 I
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I
Bra022766 Brassica rapa Bra022766 I
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I
BRADI3G41250 Brachypodium distachyon BRADI3G41250 I
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I
Carubv10026628m.g Capsella rubella Carubv10026628m.g I
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I
cassava39122.m1 Manihot esculenta cassava39122.m1 I
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I
Ca_01426 Cicer arietinum Ca_01426 I
Ca_05711 Cicer arietinum Ca_05711 I
Ca_19449 Cicer arietinum Ca_19449 I
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I
Cla001541 Citrullus lanatus Cla001541 I
Cla002666 Citrullus lanatus Cla002666 I
Cla004156 Citrullus lanatus Cla004156 I
Cla018827 Citrullus lanatus Cla018827 I
Cla019331 Citrullus lanatus Cla019331 I
Cla019579 Citrullus lanatus Cla019579 I
Cucsa.054050 Cucumis sativus Cucsa.054050 I
Cucsa.113410 Cucumis sativus Cucsa.113410 I
Cucsa.157230 Cucumis sativus Cucsa.157230 I
Cucsa.198630 Cucumis sativus Cucsa.198630 I
Cucsa.349620 Cucumis sativus Cucsa.349620 I
Cucsa.392170 Cucumis sativus Cucsa.392170 I
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I
gene01338-v1.0-hybrid Fragaria vesca gene01338-v1.0-hybrid I
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I
GLYMA0005S50 Glycine max GLYMA0005S50 I
GLYMA04G32002 Glycine max GLYMA04G32002 I
GLYMA04G37391 Glycine max GLYMA04G37391 I
GLYMA05G38180 Glycine max GLYMA05G38180 I
GLYMA06G17700 Glycine max GLYMA06G17700 I
GLYMA08G01450 Glycine max GLYMA08G01450 I
GLYMA16G05895 Glycine max GLYMA16G05895 I
GLYMA17G08840 Glycine max GLYMA17G08840 I
GLYMA19G26390 Glycine max GLYMA19G26390 I
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I
Gorai.012G185700 Gossypium raimondii Gorai.012G185700 N
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I
GRMZM2G061734 Zea mays GRMZM2G061734 I
GRMZM2G101511 Zea mays GRMZM2G101511 N
GRMZM2G106798 Zea mays GRMZM2G106798 I
GRMZM2G371033 Zea mays GRMZM2G371033 I
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I
LPERR01G36700 Leersia perrieri LPERR01G36700 I
LPERR08G18310 Leersia perrieri LPERR08G18310 I
LPERR09G11920 Leersia perrieri LPERR09G11920 I
LPERR11G11330 Leersia perrieri LPERR11G11330 I
Lus10003126.g Linum usitatissimum Lus10003126.g N
Lus10011348.g Linum usitatissimum Lus10011348.g I
Lus10015764.g Linum usitatissimum Lus10015764.g I
MDP0000119458 Malus domestica MDP0000119458 I
MDP0000146640 Malus domestica MDP0000146640 I
MDP0000193702 Malus domestica MDP0000193702 I
MDP0000778465 Malus domestica MDP0000778465 I
mgf003797m Mimulus guttatus mgf003797m I
mgf010913m Mimulus guttatus mgf010913m I
MLOC_52321 Hordeum vulgare MLOC_52321 I
MTR_2g461920 Medicago truncatula MTR_2g461920 I
MTR_3g099080 Medicago truncatula MTR_3g099080 I
MTR_4g109770 Medicago truncatula MTR_4g109770 I
MTR_8g096780 Medicago truncatula MTR_8g096780 I
OBART01G42150 Oryza barthii OBART01G42150 I
OBART09G15750 Oryza barthii OBART09G15750 I
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I
OGLUM09G16320 Oryza glumaepatula OGLUM09G16320 I
OMERI01G39190 Oryza meridionalis OMERI01G39190 I
OMERI06G13610 Oryza meridionalis OMERI06G13610 I
OMERI11G11920 Oryza meridionalis OMERI11G11920 I
ONIVA01G48230 Oryza nivara ONIVA01G48230 I
ONIVA08G24550 Oryza nivara ONIVA08G24550 I
ONIVA09G16860 Oryza nivara ONIVA09G16860 I
OPUNC01G41070 Oryza punctata OPUNC01G41070 I
OPUNC08G19660 Oryza punctata OPUNC08G19660 I
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I
ORUFI08G24030 Oryza rufipogon ORUFI08G24030 N
OS01G0922600 Oryza sativa OS01G0922600 I
SPL16 Oryza sativa OS08G0531600 I
SPL18 Oryza sativa OS09G0507100 I
SPL19 Oryza sativa OS11G0496600 I
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I
Pavir.J02262 Panicum virgatum Pavir.J02262 I
Pavir.J28847 Panicum virgatum Pavir.J28847 N
Pavir.J30793 Panicum virgatum Pavir.J30793 N
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I
PK02140.1 Cannabis sativa PK02140.1 I
PK14243.1 Cannabis sativa PK14243.1 N
PK19500.1 Cannabis sativa PK19500.1 I
Pm024528 Prunus mume Pm024528 I
Pm025028 Prunus mume Pm025028 I
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I
POPTR_0003s16780 Populus trichocarpa POPTR_0003s16780 I
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I
Sb02g029300 Sorghum bicolor Sb02g029300 I
Sb03g044160 Sorghum bicolor Sb03g044160 I
Sb05g017510 Sorghum bicolor Sb05g017510 I
Sb07g026220 Sorghum bicolor Sb07g026220 N
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I
Si001804m.g Setaria italica Si001804m.g I
Si013747m.g Setaria italica Si013747m.g N
Si026656m.g Setaria italica Si026656m.g I
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I
TCM_008671 Theobroma cacao TCM_008671 I
TCM_011483 Theobroma cacao TCM_011483 I
TCM_014330 Theobroma cacao TCM_014330 I
TCM_014668 Theobroma cacao TCM_014668 I
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I
VIT_14s0068g01780 Vitis vinifera VIT_14s0068g01780 N
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I