CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm002519
(
Prunus mume
)
S1FA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF04689 (S1FA)
IPR006779
Pm002519
T321462_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm002519
S1FA
18
83
VAAAKGFNPGLIVLLVVVGLLVIFLVGNYALYVYAQRTVPPKKKKPVSKKKLKRERLKQGVSAPGE
Links
Other
S1FA
family TFs
Other
Prunus mume
TFs
98 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29805.m001471
Ricinus communis
29805.m001471
I
0.742
AMTR_s00052p00202630
Amborella trichopoda
AMTR_s00052p00202630
I
0.758
Aquca_027_00077
Aquilegia coerulea
Aquca_027_00077
I
0.833
S1FA2
Arabidopsis thaliana
AT2G37120
I
0.712
S1FA1
Arabidopsis thaliana
AT3G53370
I
0.742
BGIOSGA015142
Oryza indica
BGIOSGA015142
N
0.758
BGIOSGA015143
Oryza indica
BGIOSGA015143
N
0.727
BGIOSGA015145
Oryza indica
BGIOSGA015145
N
0.758
Bo00703s130
Brassica oleracea
Bo00703s130
I
0.742
Bo00703s150
Brassica oleracea
Bo00703s150
I
0.742
Bo6g067310
Brassica oleracea
Bo6g067310
I
0.758
Bostr.11793s0058
Boechera stricta
Bostr.11793s0058
I
0.712
Bostr.23794s0377
Boechera stricta
Bostr.23794s0377
I
0.742
Bra003132
Brassica rapa
Bra003132
I
0.758
Bra006994
Brassica rapa
Bra006994
I
0.727
Bra039779
Brassica rapa
Bra039779
I
0.727
BRADI5G09140
Brachypodium distachyon
BRADI5G09140
N
0.773
Cagra.0612s0062
Capsella grandiflora
Cagra.0612s0062
I
0.727
Cagra.0666s0032
Capsella grandiflora
Cagra.0666s0032
I
0.727
Carubv10018341m.g
Capsella rubella
Carubv10018341m.g
I
0.727
Carubv10025429m.g
Capsella rubella
Carubv10025429m.g
I
0.727
cassava45931.m1
Manihot esculenta
cassava45931.m1
I
0.788
Ca_12027
Cicer arietinum
Ca_12027
I
0.758
Ca_12028
Cicer arietinum
Ca_12028
I
0.727
chr1.CM0033.550.nc
Lotus japonicus
chr1.CM0033.550.nc
I
0.727
Ciclev10013218m.g
Citrus clementina
Ciclev10013218m.g
I
0.818
Cla018106
Citrullus lanatus
Cla018106
I
0.818
Cla018556
Citrullus lanatus
Cla018556
I
0.833
Cucsa.124240
Cucumis sativus
Cucsa.124240
I
0.833
Cucsa.307040
Cucumis sativus
Cucsa.307040
I
0.818
Eucgr.A01168
Eucalyptus grandis
Eucgr.A01168
I
0.833
evm.TU.supercontig_638.2
Carica papaya
evm.TU.supercontig_638.2
I
0.758
fgenesh1_pm.C_scaffold_5001425
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5001425
I
0.742
gene09647-v1.0-hybrid
Fragaria vesca
gene09647-v1.0-hybrid
N
0.909
GLYMA03G33640
Glycine max
GLYMA03G33640
I
0.773
GLYMA10G05790
Glycine max
GLYMA10G05790
I
0.758
GLYMA13G20160
Glycine max
GLYMA13G20160
I
0.758
GLYMA19G36350
Glycine max
GLYMA19G36350
I
0.758
Gorai.002G249300
Gossypium raimondii
Gorai.002G249300
I
0.803
Gorai.006G168100
Gossypium raimondii
Gorai.006G168100
I
0.818
Gorai.009G419300
Gossypium raimondii
Gorai.009G419300
I
0.788
GRMZM2G056929
Zea mays
GRMZM2G056929
N
0.742
GRMZM2G147424
Zea mays
GRMZM2G147424
N
0.742
GSMUA_Achr10G13120_001
Musa acuminata
GSMUA_Achr10G13120_001
I
0.803
GSMUA_Achr6G23400_001
Musa acuminata
GSMUA_Achr6G23400_001
N
0.788
LPERR04G08400
Leersia perrieri
LPERR04G08400
N
0.727
LPERR04G08410
Leersia perrieri
LPERR04G08410
I
0.727
Lus10015073.g
Linum usitatissimum
Lus10015073.g
I
0.773
Lus10023177.g
Linum usitatissimum
Lus10023177.g
I
0.773
MDP0000276000
Malus domestica
MDP0000276000
N
0.864
MDP0000559232
Malus domestica
MDP0000559232
N
0.773
mgf000337m
Mimulus guttatus
mgf000337m
I
0.773
mgf004062m
Mimulus guttatus
mgf004062m
I
0.773
MLOC_67411
Hordeum vulgare
MLOC_67411
N
0.758
MTR_7g100880
Medicago truncatula
MTR_7g100880
I
0.742
MTR_7g100890
Medicago truncatula
MTR_7g100890
I
0.742
MTR_7g100905
Medicago truncatula
MTR_7g100905
I
0.773
OB04G18770
Oryza brachyantha
OB04G18770
I
0.742
OB04G18780
Oryza brachyantha
OB04G18780
I
0.758
OBART04G11650
Oryza barthii
OBART04G11650
N
0.727
OBART04G11660
Oryza barthii
OBART04G11660
N
0.758
OGLUM04G11330
Oryza glumaepatula
OGLUM04G11330
N
0.727
OGLUM04G11340
Oryza glumaepatula
OGLUM04G11340
N
0.758
OMERI04G10270
Oryza meridionalis
OMERI04G10270
N
0.712
OMERI04G10280
Oryza meridionalis
OMERI04G10280
N
0.758
ONIVA04G09610
Oryza nivara
ONIVA04G09610
N
0.727
ONIVA04G09620
Oryza nivara
ONIVA04G09620
N
0.758
OPUNC04G09660
Oryza punctata
OPUNC04G09660
N
0.758
orange1.1g044991m.g
Citrus sinensis
orange1.1g044991m.g
I
0.818
ORGLA04G0086600
Oryza glaberrima
ORGLA04G0086600
N
0.727
ORGLA04G0086800
Oryza glaberrima
ORGLA04G0086800
N
0.758
ORUFI04G12840
Oryza rufipogon
ORUFI04G12840
N
0.727
ORUFI04G12850
Oryza rufipogon
ORUFI04G12850
N
0.758
S1FA2
Oryza sativa
OS04G0408700
N
0.727
OS04G0408900
Oryza sativa
OS04G0408900
N
0.758
Pavir.Ga01929
Panicum virgatum
Pavir.Ga01929
N
0.773
Pavir.Gb01773
Panicum virgatum
Pavir.Gb01773
N
0.773
PGSC0003DMG400001772
Solanum tuberosum
PGSC0003DMG400001772
I
0.773
PGSC0003DMG400020934
Solanum tuberosum
PGSC0003DMG400020934
I
0.742
PGSC0003DMG401017590
Solanum tuberosum
PGSC0003DMG401017590
I
0.727
PK08477.1
Cannabis sativa
PK08477.1
I
0.712
POPTR_0006s13230
Populus trichocarpa
POPTR_0006s13230
I
0.742
POPTR_0016s08890
Populus trichocarpa
POPTR_0016s08890
I
0.773
PRUPE_ppa014157mg
Prunus persica
PRUPE_ppa014157mg
N
1.000
SapurV1A.0112s0080
Salix purpurea
SapurV1A.0112s0080
I
0.773
SapurV1A.0209s0130
Salix purpurea
SapurV1A.0209s0130
I
0.773
Sb06g015340
Sorghum bicolor
Sb06g015340
N
0.742
scaffold_402348.1
Arabidopsis lyrata
scaffold_402348.1
I
0.742
Si011030m.g
Setaria italica
Si011030m.g
N
0.773
Solyc09g007500.2
Solanum lycopersicum
Solyc09g007500.2
I
0.788
TCM_022113
Theobroma cacao
TCM_022113
I
0.818
Thhalv10010878m.g
Eutrema salsugineum
Thhalv10010878m.g
I
0.758
Thhalv10017496m.g
Eutrema salsugineum
Thhalv10017496m.g
I
0.758
Traes_2AL_65586C538
Triticum aestivum
Traes_2AL_65586C538
N
0.758
Traes_2BL_26A5F9082
Triticum aestivum
Traes_2BL_26A5F9082
N
0.758
Traes_2DL_032C7FC8C
Triticum aestivum
Traes_2DL_032C7FC8C
N
0.758
VIT_06s0004g03160
Vitis vinifera
VIT_06s0004g03160
I
0.848
VIT_08s0040g02220
Vitis vinifera
VIT_08s0040g02220
I
0.788