orange1.1g020302m.g (Citrus sinensis)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 orange1.1g020302m.g T323602_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.983 0.933
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.941 0.800
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.939 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g020302m SBP 182 256
orange1.1g023467m SBP 182 256
orange1.1g026888m SBP 182 230

Links

Other SBP family TFs
Other Citrus sinensis TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30174.m008803 Ricinus communis 30174.m008803 I 0.986
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.937
AMTR_s00106p00144050 Amborella trichopoda AMTR_s00106p00144050 I 0.905
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.956
SPL8 Arabidopsis thaliana AT1G02065 D 0.983
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.933
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.927
SPL10 Oryza indica BGIOSGA023408 I 0.910
Bo5g001290 Brassica oleracea Bo5g001290 I 0.983
Bo8g118210 Brassica oleracea Bo8g118210 I 0.983
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.983
Bra032662 Brassica rapa Bra032662 I 0.983
Bra033221 Brassica rapa Bra033221 I 0.983
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.904
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.903
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.927
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.983
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.984
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.976
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.986
Ca_18942 Cicer arietinum Ca_18942 I 0.986
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.987
Cla006776 Citrullus lanatus Cla006776 I 0.985
Cla020006 Citrullus lanatus Cla020006 I 0.901
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.977
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.895
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.986
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.986
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.919
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.939
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.957
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.941
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.960
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.938
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.983
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.986
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.979
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.986
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.986
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.986
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.986
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.927
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.925
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.907
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.903
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.926
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.952
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.955
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.941
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.948
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.949
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.960
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.921
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.961
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.915
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.927
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.910
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.985
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.984
MDP0000803116 Malus domestica MDP0000803116 I 0.986
mgf016085m Mimulus guttatus mgf016085m I 0.986
MLOC_326 Hordeum vulgare MLOC_326 I 0.910
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.896
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.927
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.985
OB02G15090 Oryza brachyantha OB02G15090 I 0.915
OB04G34990 Oryza brachyantha OB04G34990 I 0.927
OB06G31100 Oryza brachyantha OB06G31100 I 0.910
OBART04G27990 Oryza barthii OBART04G27990 I 0.927
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.927
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.910
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.927
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.933
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.927
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.910
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.910
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.927
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.911
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.927
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.910
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.933
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.927
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.910
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.927
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.910
SPL5 Oryza sativa OS02G0177300 I 0.933
SPL8 Oryza sativa OS04G0656500 I 0.927
SPL10 Oryza sativa OS06G0659100 I 0.910
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.914
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.910
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.910
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.927
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.927
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.986
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.986
PK25779.1 Cannabis sativa PK25779.1 I 0.986
Pm017777 Prunus mume Pm017777 I 0.979
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.986
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.986
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.979
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.983
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.986
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.903
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.927
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.910
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.941
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.930
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.929
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.941
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.951
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.951
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.929
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.930
Si006559m.g Setaria italica Si006559m.g I 0.910
Si017338m.g Setaria italica Si017338m.g I 0.926
Si022315m.g Setaria italica Si022315m.g I 0.927
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.986
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.986
TCM_005622 Theobroma cacao TCM_005622 I 0.986
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.983
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.910
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.927
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.983