CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla016375
(
Citrullus lanatus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Cla016375
T333646_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla016375
Sox
1
36
MIGESCNNLSPEERMVYQNIGLKDKERYKRELKEYK
Links
Other
Sox
family TFs
Other
Citrullus lanatus
TFs
167 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
67303
Aureococcus anophagefferens
67303
N
0.591
68433
Aureococcus anophagefferens
68433
N
0.430
AAEL000771
Aedes aegypti
AAEL000771
N
0.543
AALB009772
Anopheles albimanus
AALB009772
N
0.468
AALB009867
Anopheles albimanus
AALB009867
N
0.506
Aan_R006397
Calypte anna
Aan_R006397
N
0.454
AATE015714
Anopheles atroparvus
AATE015714
N
0.474
AATE016483
Anopheles atroparvus
AATE016483
N
0.510
ACEP25851
Atta cephalotes
ACEP25851
N
0.474
ACOM022799
Anopheles coluzzii
ACOM022799
N
0.506
ACOM026653
Anopheles coluzzii
ACOM026653
N
0.468
ACUA008827
Anopheles culicifacies
ACUA008827
N
0.503
ACUA010594
Anopheles culicifacies
ACUA010594
N
0.512
ACUA012732
Anopheles culicifacies
ACUA012732
N
0.543
ADIR005631
Anopheles dirus
ADIR005631
N
0.436
ADIR009661
Anopheles dirus
ADIR009661
N
0.468
AEPI003629
Anopheles epiroticus
AEPI003629
N
0.512
AEPI007652
Anopheles epiroticus
AEPI007652
N
0.503
AEPI007948
Anopheles epiroticus
AEPI007948
N
0.543
Afo_R012388
Aptenodytes forsteri
Afo_R012388
N
0.510
Afo_R012670
Aptenodytes forsteri
Afo_R012670
N
0.422
AFUN006689
Anopheles funestus
AFUN006689
N
0.503
AFUN009317
Anopheles funestus
AFUN009317
N
0.543
AFUN010198
Anopheles funestus
AFUN010198
N
0.512
AGAP028091
Anopheles gambiae
AGAP028091
N
0.550
ALUE_0000245701
Ascaris lumbricoides
ALUE_0000245701
N
0.512
ALUE_0000639901
Ascaris lumbricoides
ALUE_0000639901
N
0.512
AMAM004028
Anopheles maculatus
AMAM004028
N
0.503
AMAM023617
Anopheles maculatus
AMAM023617
N
0.543
AMEC007393
Anopheles melas
AMEC007393
N
0.503
AMEC011653
Anopheles melas
AMEC011653
N
0.543
AMEM002834
Anopheles merus
AMEM002834
N
0.543
AMEM007694
Anopheles merus
AMEM007694
N
0.418
AMIN001220
Anopheles minimus
AMIN001220
N
0.503
AMIN009302
Anopheles minimus
AMIN009302
N
0.512
ANCCEY_05358
Ancylostoma ceylanicum
ANCCEY_05358
N
0.499
ANCDUO_13942
Ancylostoma duodenale
ANCDUO_13942
N
0.598
AQUA001261
Anopheles quadriannulatus
AQUA001261
N
0.506
AQUA005880
Anopheles quadriannulatus
AQUA005880
N
0.468
ASIS001889
Anopheles sinensis
ASIS001889
N
0.449
ASTEI06131
Anopheles stephensi
ASTEI06131
N
0.543
ASTEI06408
Anopheles stephensi
ASTEI06408
N
0.436
AWRI1499_3370
Brettanomyces bruxellensis
AWRI1499_3370
N
0.428
BGIBMGA003081
Bombyx mori
BGIBMGA003081
N
0.512
BGLB010902
Biomphalaria glabrata
BGLB010902
N
0.428
CLEC006960
Cimex lectularius
CLEC006960
N
0.512
CMQ_5875
Grosmannia clavigera
CMQ_5875
N
0.477
Cmyd_10006594
Chelonia mydas
Cmyd_10006594
N
0.510
CPIJ012041
Culex quinquefasciatus
CPIJ012041
N
0.506
CPIJ012498
Culex quinquefasciatus
CPIJ012498
N
0.456
CPIJ014017
Culex quinquefasciatus
CPIJ014017
N
0.503
CpipJ_CPIJ012041
Culex pipiens
CpipJ_CPIJ012041
N
0.506
CpipJ_CPIJ012498
Culex pipiens
CpipJ_CPIJ012498
N
0.456
CpipJ_CPIJ014017
Culex pipiens
CpipJ_CPIJ014017
N
0.503
DAPPUDRAFT_113704
Daphnia pulex
DAPPUDRAFT_113704
N
0.512
DDB_G0287073
Dictyostelium discoideum
DDB_G0287073
N
0.535
DICVIV_04576
Dictyocaulus viviparus
DICVIV_04576
N
0.439
DILT_0001419401
Diphyllobothrium latum
DILT_0001419401
N
0.455
ECPE_0001383301
Echinostoma caproni
ECPE_0001383301
N
0.539
EFA85451.1
Polysphondylium pallidum
EFA85451.1
N
0.459
ENSAMXG00000017231
Astyanax mexicanus
ENSAMXG00000017231
I
0.503
ENSAPLG00000003216
Anas platyrhynchos
ENSAPLG00000003216
N
0.510
ENSAPLG00000010204
Anas platyrhynchos
ENSAPLG00000010204
N
0.516
ENSAPLG00000013168
Anas platyrhynchos
ENSAPLG00000013168
I
0.503
ENSBTAP00000027633-D1
Bos grunniens
ENSBTAP00000027633-D1
I
0.516
SOX8
Callithrix jacchus
ENSCJAG00000002684
I
0.510
ENSCSAG00000016751
Chlorocebus sabaeus
ENSCSAG00000016751
N
0.518
SOX18
Dasypus novemcinctus
ENSDNOG00000036237
N
0.525
Sox6
Dipodomys ordii
ENSDORG00000013073
N
0.479
SOX18
Echinops telfairi
ENSETEG00000001816
N
0.466
SOX10
Echinops telfairi
ENSETEG00000012633
I
0.503
SOX8
Echinops telfairi
ENSETEG00000015470
N
0.510
SOX9
Echinops telfairi
ENSETEG00000020237
I
0.503
ENSFALG00000011068
Ficedula albicollis
ENSFALG00000011068
N
0.452
SOX8
Felis catus
ENSFCAG00000004219
N
0.510
ENSFCAG00000015685
Felis catus
ENSFCAG00000015685
I
0.503
SOX2
Felis catus
ENSFCAG00000029205
I
0.443
ENSMGAG00000006624
Meleagris gallopavo
ENSMGAG00000006624
N
0.516
SOX8
Microcebus murinus
ENSMICG00000011516
I
0.510
SOX9
Myotis lucifugus
ENSMLUG00000030312
I
0.503
Hmg20b
Mus musculus
ENSMUSG00000020232
D
0.526
Sox17
Mus musculus
ENSMUSG00000025902
D
0.510
ENSNLEG00000002693
Nomascus leucogenys
ENSNLEG00000002693
N
0.526
ENSOANG00000002448
Ornithorhynchus anatinus
ENSOANG00000002448
I
0.418
ENSOANG00000011188
Ornithorhynchus anatinus
ENSOANG00000011188
I
0.519
SOX9
Ochotona princeps
ENSOPRG00000007860
N
0.439
ENSP00000409273
Macaca fascicularis
ENSP00000409273
I
0.503
SOX2
Procavia capensis
ENSPCAG00000003690
I
0.443
ENSPCAG00000014137
Procavia capensis
ENSPCAG00000014137
N
0.466
SOX18
Procavia capensis
ENSPCAG00000015663
N
0.518
ENSPMAG00000004519
Petromyzon marinus
ENSPMAG00000004519
N
0.452
ENSPSIG00000016857
Pelodiscus sinensis
ENSPSIG00000016857
N
0.445
SOX18
Pan troglodytes
ENSPTRG00000030459
I
0.512
BBX
Sorex araneus
ENSSARG00000008353
N
0.439
SOX17
Sorex araneus
ENSSARG00000009573
I
0.503
ENSSHAG00000008406
Sarcophilus harrisii
ENSSHAG00000008406
I
0.503
SOX9
Tupaia belangeri
ENSTBEG00000000175
N
0.503
sox9a
Tetraodon nigroviridis
ENSTNIG00000001901
N
0.503
ENSTSYG00000001164
Tarsius syrichta
ENSTSYG00000001164
I
0.506
ENSTSYG00000006321
Tarsius syrichta
ENSTSYG00000006321
I
0.510
LEF1
Tursiops truncatus
ENSTTRG00000008109
N
0.484
ENSTTRG00000015548
Tursiops truncatus
ENSTTRG00000015548
I
0.503
TCF7L2
Vicugna pacos
ENSVPAG00000008158
N
0.439
ENSVPAG00000008729
Vicugna pacos
ENSVPAG00000008729
N
0.479
estExt_fgeneshDP_kg.C_1020010
Dictyostelium purpureum
estExt_fgeneshDP_kg.C_1020010
N
0.535
estExt_Genewise1.C_sca_3_chr4_2_00418
Nectria haematococca
estExt_Genewise1.C_sca_3_chr4_2_00418
N
0.447
F443_09320
Phytophthora parasitica
F443_09320
N
0.478
fgenesh1_pm.C_scaffold_23000166
Phytophthora capsici
fgenesh1_pm.C_scaffold_23000166
N
0.477
fgenesh_scip_prom.28083.3150
Phytophthora lateralis
fgenesh_scip_prom.28083.3150
N
0.477
Gfo_R008143
Geospiza fortis
Gfo_R008143
N
0.452
GLOINDRAFT_271935
Rhizophagus irregularis
GLOINDRAFT_271935
N
0.464
GLOINDRAFT_335861
Rhizophagus irregularis
GLOINDRAFT_335861
N
0.510
GLOTRDRAFT_8101
Gloeophyllum trabeum
GLOTRDRAFT_8101
N
0.420
GLYMA20G01570
Glycine max
GLYMA20G01570
N
0.426
Gorai.005G106800
Gossypium raimondii
Gorai.005G106800
N
0.476
GPUH_0000499601
Gongylonema pulchrum
GPUH_0000499601
N
0.425
HelroG68905
Helobdella robusta
HelroG68905
N
0.439
HHAL000218-PA
Halyomorpha halys
HHAL000218-PA
N
0.512
HHAL001293-PA
Halyomorpha halys
HHAL001293-PA
N
0.474
HMEL013676
Heliconius melpomene
HMEL013676
N
0.521
HmN_000301900
Hymenolepis microstoma
HmN_000301900
N
0.544
ISCW001638
Ixodes scapularis
ISCW001638
N
0.518
JL09_g5343
Pichia kudriavzevii
JL09_g5343
N
0.504
L798_00185
Zootermopsis nevadensis
L798_00185
N
0.470
L798_12046
Zootermopsis nevadensis
L798_12046
N
0.512
L898_g4879
Steinernema monticolum
L898_g4879
N
0.506
LDEC017494
Leptinotarsa decemlineata
LDEC017494
N
0.506
LDEC018263
Leptinotarsa decemlineata
LDEC018263
N
0.521
LotgiG143673
Lottia gigantea
LotgiG143673
N
0.512
M422DRAFT_54734
Sphaerobolus stellatus
M422DRAFT_54734
N
0.477
M7I_1506
Glarea lozoyensis
M7I_1506
N
0.435
Minc18937
Meloidogyne incognita
Minc18937
N
0.545
MPER_06248
Moniliophthora perniciosa
MPER_06248
N
0.479
Myotis_brandtii_Hmgb2_10029741
Myotis brandtii
Myotis_brandtii_Hmgb2_10029741
N
0.514
Myotis_brandtii_TFAM_10031378
Myotis brandtii
Myotis_brandtii_TFAM_10031378
N
0.452
Myotis_brandtii_TIMM8A_10019481
Myotis brandtii
Myotis_brandtii_TIMM8A_10019481
N
0.510
NechaG59892
Fusarium solani
NechaG59892
N
0.447
OESDEN_19415
Oesophagostomum dentatum
OESDEN_19415
N
0.584
Ogr00751
Ophisaurus gracilis
Ogr00751
I
0.510
Ogr11176
Ophisaurus gracilis
Ogr11176
N
0.512
Ogr13852
Ophisaurus gracilis
Ogr13852
N
0.446
PEQ_0000549401
Parascaris equorum
PEQ_0000549401
N
0.512
PHUM433280
Pediculus humanus
PHUM433280
N
0.550
Phyra76615
Phytophthora ramorum
Phyra76615
N
0.477
Physo127875
Phytophthora sojae
Physo127875
N
0.477
PK00252.1
Cannabis sativa
PK00252.1
N
0.507
PLEOSDRAFT_1017219
Pleurotus ostreatus
PLEOSDRAFT_1017219
N
0.422
PPAI005428
Phlebotomus papatasi
PPAI005428
N
0.439
PredSwiss_ASS2010_3779.1
Pneumocystis carinii
PredSwiss_ASS2010_3779.1
N
0.479
PredSwiss_CON1835.1
Pneumocystis carinii
PredSwiss_CON1835.1
N
0.479
SapurV1A.0237s0190
Salix purpurea
SapurV1A.0237s0190
N
0.482
SCLCIDRAFT_59496
Scleroderma citrinum
SCLCIDRAFT_59496
N
0.420
SINV16572
Solenopsis invicta
SINV16572
N
0.550
SINV19749
Solenopsis invicta
SINV19749
N
0.430
SMAR007058
Strigamia maritima
SMAR007058
N
0.506
SMAR010125
Strigamia maritima
SMAR010125
N
0.449
TC009856
Tribolium castaneum
TC009856
N
0.543
TcIL3000.10.440
Trypanosoma congolense
TcIL3000.10.440
N
0.446
TCNE_0000669501
Toxocara canis
TCNE_0000669501
N
0.448
TVAG_114290
Trichomonas vaginalis
TVAG_114290
N
0.517
UCREL1_237
Eutypa lata
UCREL1_237
N
0.416
VDBG_04936
Verticillium albo atrum
VDBG_04936
N
0.439
VDBG_04936
Verticillium alfalfae
VDBG_04936
N
0.439
WUBG_12101
Wuchereria bancrofti
WUBG_12101
N
0.544
yakG000714
Bos grunniens
yakG000714
N
0.447
YQE_03817
Dendroctonus ponderosae
YQE_03817
N
0.521
YQE_13041
Dendroctonus ponderosae
YQE_13041
N
0.456