Lus10001909.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10001909.g T334557_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.537 0.681
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.537 0.681
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10001909 Sox 174 241
Lus10001909 Sox 292 358
Lus10001909 Sox 420 488

Links

Other Sox family TFs
Other Linum usitatissimum TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29813.m001508 Ricinus communis 29813.m001508 I
Bo9g072860 Brassica oleracea Bo9g072860 N
Bra017404 Brassica rapa Bra017404 I
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I
cassava17346.m1 Manihot esculenta cassava17346.m1 I
Ca_16376 Cicer arietinum Ca_16376 I
Ca_18082 Cicer arietinum Ca_18082 I
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I
Cla010361 Citrullus lanatus Cla010361 I
Cucsa.284960 Cucumis sativus Cucsa.284960 I
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N
GLYMA07G35610 Glycine max GLYMA07G35610 N
GLYMA20G04500 Glycine max GLYMA20G04500 N
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I
Lus10026613.g Linum usitatissimum Lus10026613.g I
Lus10030450.g Linum usitatissimum Lus10030450.g I
MDP0000146231 Malus domestica MDP0000146231 I
MDP0000146415 Malus domestica MDP0000146415 I
MDP0000147667 Malus domestica MDP0000147667 I
MDP0000773068 Malus domestica MDP0000773068 I
MDP0000919323 Malus domestica MDP0000919323 I
MTR_5g041650 Medicago truncatula MTR_5g041650 I
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I
PK03147.1 Cannabis sativa PK03147.1 I
Pm006479 Prunus mume Pm006479 I
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I
TCM_011687 Theobroma cacao TCM_011687 I