Lus10033951.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10033951.g T334581_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10033951 Sox 175 238
Lus10033951 Sox 236 273
Lus10033951 Sox 335 404

Links

Other Sox family TFs
Other Linum usitatissimum TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00032p00057800 Amborella trichopoda AMTR_s00032p00057800 I
Aquca_030_00245 Aquilegia coerulea Aquca_030_00245 N
ATMYB13 Arabidopsis thaliana AT1G06180 D
BGIOSGA006005 Oryza indica BGIOSGA006005 I
BGIOSGA031688 Oryza indica BGIOSGA031688 I
Bostr.24513s0107 Boechera stricta Bostr.24513s0107 I
Bostr.25219s0339 Boechera stricta Bostr.25219s0339 I
Cagra.1671s0249 Capsella grandiflora Cagra.1671s0249 I
cassava14699.m1 Manihot esculenta cassava14699.m1 I
cassava25784.m1 Manihot esculenta cassava25784.m1 I
cassava26894.m1 Manihot esculenta cassava26894.m1 N
cassava26895.m1 Manihot esculenta cassava26895.m1 N
cassava37350.valid.m1 Manihot esculenta cassava37350.valid.m1 I
cassava47180.m1 Manihot esculenta cassava47180.m1 I
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I
Ca_22597 Cicer arietinum Ca_22597 N
chr1.CM0295.20.nd Lotus japonicus chr1.CM0295.20.nd I
Ciclev10017435m.g Citrus clementina Ciclev10017435m.g I
Ciclev10017677m.g Citrus clementina Ciclev10017677m.g I
Ciclev10017679m.g Citrus clementina Ciclev10017679m.g I
Ciclev10018311m.g Citrus clementina Ciclev10018311m.g I
Ciclev10021699m.g Citrus clementina Ciclev10021699m.g I
Ciclev10022057m.g Citrus clementina Ciclev10022057m.g I
Cla006077 Citrullus lanatus Cla006077 I
Cucsa.053600 Cucumis sativus Cucsa.053600 I
Eucgr.A01766 Eucalyptus grandis Eucgr.A01766 I
Eucgr.D00040 Eucalyptus grandis Eucgr.D00040 I
Eucgr.D00042 Eucalyptus grandis Eucgr.D00042 I
Eucgr.D00050 Eucalyptus grandis Eucgr.D00050 N
Eucgr.H00158 Eucalyptus grandis Eucgr.H00158 I
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I
evm.TU.supercontig_44.60 Carica papaya evm.TU.supercontig_44.60 I
evm.TU.supercontig_50.19 Carica papaya evm.TU.supercontig_50.19 I
ATMYB13 Arabidopsis lyrata fgenesh2_kg.1__590__AT1G06180.1 I
gene01997-v1.0-hybrid Fragaria vesca gene01997-v1.0-hybrid I
gene08084-v1.0-hybrid Fragaria vesca gene08084-v1.0-hybrid I
gene11462-v1.0-hybrid Fragaria vesca gene11462-v1.0-hybrid I
GLYMA03G41100 Glycine max GLYMA03G41100 I
GLYMA06G45520 Glycine max GLYMA06G45520 N
GLYMA06G45531 Glycine max GLYMA06G45531 N
GLYMA06G45554 Glycine max GLYMA06G45554 I
GLYMA12G11330 Glycine max GLYMA12G11330 I
GLYMA12G11490 Glycine max GLYMA12G11490 N
GLYMA12G32530 Glycine max GLYMA12G32530 I
GLYMA12G32541 Glycine max GLYMA12G32541 N
GLYMA13G37903 Glycine max GLYMA13G37903 I
Gorai.001G177100 Gossypium raimondii Gorai.001G177100 I
Gorai.002G016800 Gossypium raimondii Gorai.002G016800 I
Gorai.004G183500 Gossypium raimondii Gorai.004G183500 I
Gorai.004G183600 Gossypium raimondii Gorai.004G183600 I
Gorai.007G146200 Gossypium raimondii Gorai.007G146200 I
Gorai.008G151100 Gossypium raimondii Gorai.008G151100 I
Gorai.010G148300 Gossypium raimondii Gorai.010G148300 N
Gorai.011G021300 Gossypium raimondii Gorai.011G021300 N
Gorai.011G173900 Gossypium raimondii Gorai.011G173900 I
Gorai.012G132400 Gossypium raimondii Gorai.012G132400 I
Gorai.013G072900 Gossypium raimondii Gorai.013G072900 I
Gorai.013G073000 Gossypium raimondii Gorai.013G073000 N
GRMZM2G127857 Zea mays GRMZM2G127857 I
GRMZM2G147346 Zea mays GRMZM2G147346 I
GSMUA_Achr11G00410_001 Musa acuminata GSMUA_Achr11G00410_001 I
GSMUA_Achr11G22820_001 Musa acuminata GSMUA_Achr11G22820_001 I
GSMUA_Achr11G23500_001 Musa acuminata GSMUA_Achr11G23500_001 N
GSMUA_Achr1G09180_001 Musa acuminata GSMUA_Achr1G09180_001 I
GSMUA_Achr2G18090_001 Musa acuminata GSMUA_Achr2G18090_001 I
GSMUA_Achr4G21910_001 Musa acuminata GSMUA_Achr4G21910_001 I
GSMUA_Achr4G28850_001 Musa acuminata GSMUA_Achr4G28850_001 I
GSMUA_Achr5G03920_001 Musa acuminata GSMUA_Achr5G03920_001 I
GSMUA_Achr5G14600_001 Musa acuminata GSMUA_Achr5G14600_001 I
GSMUA_Achr5G18600_001 Musa acuminata GSMUA_Achr5G18600_001 I
Lus10003557.g Linum usitatissimum Lus10003557.g I
Lus10018518.g Linum usitatissimum Lus10018518.g N
Lus10022021.g Linum usitatissimum Lus10022021.g I
Lus10031607.g Linum usitatissimum Lus10031607.g N
Lus10033737.g Linum usitatissimum Lus10033737.g N
Lus10033738.g Linum usitatissimum Lus10033738.g N
Lus10033889.g Linum usitatissimum Lus10033889.g I
Lus10039734.g Linum usitatissimum Lus10039734.g I
Lus10039735.g Linum usitatissimum Lus10039735.g I
Lus10042561.g Linum usitatissimum Lus10042561.g I
MDP0000131822 Malus domestica MDP0000131822 I
MDP0000145050 Malus domestica MDP0000145050 I
MDP0000148689 Malus domestica MDP0000148689 N
MDP0000155426 Malus domestica MDP0000155426 I
MDP0000407613 Malus domestica MDP0000407613 N
MDP0000897594 Malus domestica MDP0000897594 I
mgf011672m Mimulus guttatus mgf011672m I
mgf018684m Mimulus guttatus mgf018684m N
mgf022141m Mimulus guttatus mgf022141m N
mgf022158m Mimulus guttatus mgf022158m N
MTR_0008s0280 Medicago truncatula MTR_0008s0280 N
MTR_0008s0390 Medicago truncatula MTR_0008s0390 N
MTR_0008s0470 Medicago truncatula MTR_0008s0470 N
MTR_0251s0050 Medicago truncatula MTR_0251s0050 N
MTR_2g089420 Medicago truncatula MTR_2g089420 N
OB0039G10010 Oryza brachyantha OB0039G10010 I
OB02G31990 Oryza brachyantha OB02G31990 I
OB04G25860 Oryza brachyantha OB04G25860 I
OMERI10G10120 Oryza meridionalis OMERI10G10120 I
ONIVA04G17140 Oryza nivara ONIVA04G17140 I
orange1.1g037956m.g Citrus sinensis orange1.1g037956m.g N
orange1.1g042846m.g Citrus sinensis orange1.1g042846m.g I
ORGLA02G0213400 Oryza glaberrima ORGLA02G0213400 I
ORGLA04G0158700 Oryza glaberrima ORGLA04G0158700 I
ORUFI02G25970 Oryza rufipogon ORUFI02G25970 I
ORUFI04G20280 Oryza rufipogon ORUFI04G20280 I
ORUFI10G14060 Oryza rufipogon ORUFI10G14060 I
MYB30 Oryza sativa OS02G0624300 I
OS10G0478300 Oryza sativa OS10G0478300 I
Pavir.Aa01310 Panicum virgatum Pavir.Aa01310 I
Pavir.Ab02340 Panicum virgatum Pavir.Ab02340 I
Pavir.Gb00650 Panicum virgatum Pavir.Gb00650 I
Pavir.Ia01684 Panicum virgatum Pavir.Ia01684 I
Pavir.J09313 Panicum virgatum Pavir.J09313 I
PDK_20s1320951g001 Phoenix dactylifera PDK_20s1320951g001 I
PGSC0003DMG400013405 Solanum tuberosum PGSC0003DMG400013405 I
PGSC0003DMG400017223 Solanum tuberosum PGSC0003DMG400017223 I
PGSC0003DMG400046667 Solanum tuberosum PGSC0003DMG400046667 N
PGSC0003DMG400047175 Solanum tuberosum PGSC0003DMG400047175 N
PK08038.1 Cannabis sativa PK08038.1 I
PK18231.1 Cannabis sativa PK18231.1 I
PK20358.1 Cannabis sativa PK20358.1 I
PK24260.1 Cannabis sativa PK24260.1 N
PK29337.1 Cannabis sativa PK29337.1 I
Pm009880 Prunus mume Pm009880 N
Pm015302 Prunus mume Pm015302 N
Pm015303 Prunus mume Pm015303 I
Pm020596 Prunus mume Pm020596 I
POPTR_0001s02240 Populus trichocarpa POPTR_0001s02240 I
POPTR_0003s09300 Populus trichocarpa POPTR_0003s09300 I
POPTR_0005s24550 Populus trichocarpa POPTR_0005s24550 I
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I
POPTR_0019s14120 Populus trichocarpa POPTR_0019s14120 I
POPTR_0019s14140 Populus trichocarpa POPTR_0019s14140 N
PRUPE_ppa021921mg Prunus persica PRUPE_ppa021921mg I
PRUPE_ppa025095mg Prunus persica PRUPE_ppa025095mg I
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N
SapurV1A.0048s0170 Salix purpurea SapurV1A.0048s0170 I
SapurV1A.0233s0280 Salix purpurea SapurV1A.0233s0280 I
SapurV1A.0417s0130 Salix purpurea SapurV1A.0417s0130 I
SapurV1A.0417s0150 Salix purpurea SapurV1A.0417s0150 I
SapurV1A.0555s0160 Salix purpurea SapurV1A.0555s0160 I
SapurV1A.2051s0040 Salix purpurea SapurV1A.2051s0040 I
Sb01g019270 Sorghum bicolor Sb01g019270 I
Sb04g026480 Sorghum bicolor Sb04g026480 I
SELMODRAFT_38058 Selaginella moellendorffii SELMODRAFT_38058 I
Si010814m.g Setaria italica Si010814m.g I
Si040527m.g Setaria italica Si040527m.g I
Solyc03g005570.2 Solanum lycopersicum Solyc03g005570.2 I
Solyc07g054960.1 Solanum lycopersicum Solyc07g054960.1 I
Solyc07g054980.1 Solanum lycopersicum Solyc07g054980.1 I
Solyc08g076700.1 Solanum lycopersicum Solyc08g076700.1 I
Solyc09g090130.2 Solanum lycopersicum Solyc09g090130.2 I
TCM_004046 Theobroma cacao TCM_004046 I
TCM_007865 Theobroma cacao TCM_007865 I
TCM_007868 Theobroma cacao TCM_007868 I
TCM_026197 Theobroma cacao TCM_026197 I
TCM_030020 Theobroma cacao TCM_030020 I
Thhalv10008531m.g Eutrema salsugineum Thhalv10008531m.g I
TRIUR3_31731 Triticum urartu TRIUR3_31731 I
VIT_07s0005g03340 Vitis vinifera VIT_07s0005g03340 I
VIT_12s0134g00480 Vitis vinifera VIT_12s0134g00480 I
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I