16462_YMR016C (Saccharomyces mikatae)
APSES

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04383 (KilA-N) IPR018004 16462_YMR016C T013954_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SOK2
M00007_2.00 		Saccharomyces cerevisiae
NCMTGCAKGNN
NNCMTGCAKGN		 PBM
Badis et al.(2008)
SOK2_4560 		0.851 0.977
SOK2
M07438_2.00 		Saccharomyces cerevisiae
NNBMTGCAKNN
NNMTGCAKVNN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0385.1 		0.851 0.977
SOK2
M08477_2.00 		Saccharomyces cerevisiae
HNBCTGCR
YGCAGVND		 Misc
DeBoer et al.(2011)
YMR016C_404 		0.851 0.977
PHD1
M00006_2.00 		Saccharomyces cerevisiae
GMTGCAKG
CMTGCAKC		 PBM
Badis et al.(2008)
PHD1_4559 		0.658 0.770
PHD1
M01516_2.00 		Saccharomyces cerevisiae
NBMTGCANN
NNTGCAKVN		 PBM
Zhu et al.(2009)
Phd1 		0.658 0.770
PHD1
M07437_2.00 		Saccharomyces cerevisiae
NSMTGCABNN
NNVTGCAKSN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0355.1 		0.658 0.770
PHD1
M07547_2.00 		Saccharomyces cerevisiae
VCACACCCACACMCCACACMCNNMCVCH
DGBGKNNGKGTGTGGKGTGTGGGTGTGB		 ChIP-exo
Rhee et al.(2011)
Phd1_1 		0.658 0.770
PHD1
M07548_2.00 		Saccharomyces cerevisiae
MYGCRC
GYGCRK		 ChIP-exo
Rhee et al.(2011)
Phd1_2 		0.658 0.770
PHD1
M07549_2.00 		Saccharomyces cerevisiae
TAGCCGCCGAR
YTCGGCGGCTA		 ChIP-exo
Rhee et al.(2011)
Phd1_3 		0.658 0.770
PHD1
M08475_2.00 		Saccharomyces cerevisiae
SCNGCRGG
CCYGCNGS		 Misc
DeBoer et al.(2011)
YKL043W_393 		0.658 0.770
PHD1
M08476_2.00 		Saccharomyces cerevisiae
NSMTGCABNN
NNVTGCAKSN		 Misc
DeBoer et al.(2011)
YKL043W_554 		0.658 0.770
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
16462_YMR016C APSES 431 522

Links

Other APSES family TFs
Other Saccharomyces mikatae TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH104 Arabidopsis thaliana AT4G14410 D
Carubv10005335m.g Capsella rubella Carubv10005335m.g I
Thhalv10025927m.g Eutrema salsugineum Thhalv10025927m.g I
orange1.1g028060m.g Citrus sinensis orange1.1g028060m.g I
Lus10022186.g Linum usitatissimum Lus10022186.g I
gene11436-v1.0-hybrid Fragaria vesca gene11436-v1.0-hybrid I
evm.TU.supercontig_44.78 Carica papaya evm.TU.supercontig_44.78 I
Ciclev10005872m.g Citrus clementina Ciclev10005872m.g I
Cagra.1718s0002 Capsella grandiflora Cagra.1718s0002 I
Bostr.0597s0053 Boechera stricta Bostr.0597s0053 I
Cucsa.255290 Cucumis sativus Cucsa.255290 I
Cla021854 Citrullus lanatus Cla021854 I
PRUPE_ppa011217mg Prunus persica PRUPE_ppa011217mg I
bHLH104 Arabidopsis lyrata fgenesh2_kg.7__2895__AT4G14410.2 I
Bra041033 Brassica rapa Bra041033 I
Bra014923 Brassica rapa Bra014923 I
Bo4g126940 Brassica oleracea Bo4g126940 I
Bo1g102270 Brassica oleracea Bo1g102270 I
POPTR_0010s08360 Populus trichocarpa POPTR_0010s08360 N
Eucgr.H00174 Eucalyptus grandis Eucgr.H00174 N
Lus10021199.g Linum usitatissimum Lus10021199.g N
Lus10021876.g Linum usitatissimum Lus10021876.g N
Lus10041148.g Linum usitatissimum Lus10041148.g N
SapurV1A.0007s0940 Salix purpurea SapurV1A.0007s0940 N
SapurV1A.0292s0060 Salix purpurea SapurV1A.0292s0060 N