Afo_R001760 (Aptenodytes forsteri)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Afo_R001760 T046558_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MSGN1
M04144_2.00 		Homo sapiens
NVMCAWWTGGYN
NRCCAWWTGKBN		 SELEX
Yin et al.(2017)
MSGN1_eDBD_HT-SELEX 		0.914 0.982
Msgn1
M08772_2.00 		Mus musculus
NNRMCAAATGGY
RCCATTTGKYNN		 Misc
Kulakovskiy et al.(2013)
MSGN1_MOUSE.H11MO.0.C 		0.914 0.982
MSGN1
M04145_2.00 		Homo sapiens
NRMCAWWTGSYN
NRSCAWWTGKYN		 SELEX
Yin et al.(2017)
MSGN1_eDBD_Methyl-HT-SELEX 		0.914 0.982
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R001760 bHLH 108 162

Links

Other bHLH family TFs
Other Aptenodytes forsteri TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava18740.valid.m1 Manihot esculenta cassava18740.valid.m1 N
SapurV1A.2807s0020 Salix purpurea SapurV1A.2807s0020 N
SapurV1A.0492s0170 Salix purpurea SapurV1A.0492s0170 N
SapurV1A.0048s0510 Salix purpurea SapurV1A.0048s0510 N
MDP0000315130 Malus domestica MDP0000315130 N
MDP0000237588 Malus domestica MDP0000237588 N
MDP0000089136 Malus domestica MDP0000089136 N
Lus10039791.g Linum usitatissimum Lus10039791.g N
Lus10018560.g Linum usitatissimum Lus10018560.g N
Gorai.008G152400 Gossypium raimondii Gorai.008G152400 N
Gorai.005G204800 Gossypium raimondii Gorai.005G204800 N
gene10278-v1.0-hybrid Fragaria vesca gene10278-v1.0-hybrid N
Carubv10005638m.g Capsella rubella Carubv10005638m.g N
Cagra.1225s0078 Capsella grandiflora Cagra.1225s0078 N
Bostr.7867s0654 Boechera stricta Bostr.7867s0654 N
Cucsa.147930 Cucumis sativus Cucsa.147930 N
Bo1g051270 Brassica oleracea Bo1g051270 N
cassava12533.valid.m1 Manihot esculenta cassava12533.valid.m1 N
29983.m003255 Ricinus communis 29983.m003255 N
Pm015354 Prunus mume Pm015354 N
Cla007849 Citrullus lanatus Cla007849 N
Ca_19014 Cicer arietinum Ca_19014 N
VIT_12s0059g01980 Vitis vinifera VIT_12s0059g01980 N
TCM_007971 Theobroma cacao TCM_007971 N
PRUPE_ppa017439mg Prunus persica PRUPE_ppa017439mg N
POPTR_0019s13550 Populus trichocarpa POPTR_0019s13550 N
POPTR_0013s14170 Populus trichocarpa POPTR_0013s14170 N
GLYMA12G11800 Glycine max GLYMA12G11800 N
GLYMA06G45180 Glycine max GLYMA06G45180 N
ULT1 Arabidopsis lyrata fgenesh2_kg.7__1389__AT4G28190.1 N
Bra026276 Brassica rapa Bra026276 N
Bo7g111950 Brassica oleracea Bo7g111950 N