D917_07818 (Trichinella nativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 D917_07818 T152891_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sob
M03674_2.00 		Drosophila melanogaster
RCTACYGNRTTACGCV
BGCGTAAYNCRGTAGY		 SELEX
Nitta et al.(2015)
sob_1 		0.760 0.783
sob
M03675_2.00 		Drosophila melanogaster
NGCGTAABNSNRGTAGY
RCTACYNSNVTTACGCN		 SELEX
Nitta et al.(2015)
sob_2 		0.760 0.783
sob
M06088_2.00 		Drosophila melanogaster
GCTWCTGBDNBDV
BHVNHVCAGWAGC		 B1H
Zhu et al.(2011)
sob_SANGER_10_FBgn0004892 		0.760 0.783
sob
M06089_2.00 		Drosophila melanogaster
BDGCTACYGKDBNN
NNVHMCRGTAGCHV		 B1H
Zhu et al.(2011)
sob_SOLEXA_5_FBgn0004892 		0.760 0.783
bowl
M03676_2.00 		Drosophila melanogaster
GCGTAABACNRGKAGYN
NRCTMCYNGTVTTACGC		 SELEX
Nitta et al.(2015)
bowl_1 		0.760 0.774
bowl
M03677_2.00 		Drosophila melanogaster
NGCTACYGTRTTACGCN
NGCGTAAYACRGTAGCN		 SELEX
Nitta et al.(2015)
bowl_2 		0.760 0.774
bowl
M06090_2.00 		Drosophila melanogaster
RCTWCYGK
MCRGWAGY		 B1H
Zhu et al.(2011)
bowl_SANGER_5_FBgn0004893 		0.760 0.774
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D917_07818 C2H2 ZF 146 168
D917_07818 C2H2 ZF 174 196
D917_07818 C2H2 ZF 202 224
D917_07818 C2H2 ZF 230 252
D917_07818 C2H2 ZF 258 282

Links

Other C2H2 ZF family TFs
Other Trichinella nativa TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.000
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.000
Q948S4_TOBAC Nicotiana tabacum Q948S4_TOBAC D 0.000
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.000
PK12011.1 Cannabis sativa PK12011.1 D 0.000
AMTR_s00009p00263240 Amborella trichopoda AMTR_s00009p00263240 I 0.000
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.000
Bo1g010040 Brassica oleracea Bo1g010040 I 0.000
Bo3g007070 Brassica oleracea Bo3g007070 I 0.000
Bo3g171130 Brassica oleracea Bo3g171130 I 0.000
Bo3g179620 Brassica oleracea Bo3g179620 I 0.000
Bo7g115810 Brassica oleracea Bo7g115810 I 0.000
Bo9g171130 Brassica oleracea Bo9g171130 I 0.000
Bra006102 Brassica rapa Bra006102 I 0.000
Bra008956 Brassica rapa Bra008956 I 0.000
Bra011376 Brassica rapa Bra011376 I 0.000
Bra034531 Brassica rapa Bra034531 I 0.000
Bra037045 Brassica rapa Bra037045 I 0.000
BRADI2G31887 Brachypodium distachyon BRADI2G31887 I 0.000
F775_05724 Aegilops tauschii F775_05724 I 0.000
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.000
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.000
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.000
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.000
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.000
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.000
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.000
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.000
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.000
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.000
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.000
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.000
OB01G18340 Oryza brachyantha OB01G18340 I 0.000
OB12G16480 Oryza brachyantha OB12G16480 I 0.000
OBART01G08110 Oryza barthii OBART01G08110 I 0.000
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.000
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.000
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.000
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.000
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.000
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.000
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.000
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.000
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.000
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.000
MYB3R-2 Oryza sativa OS01G0841500 I 0.000
OS12G0238000 Oryza sativa OS12G0238000 I 0.000
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.000
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.000
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.000
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.000
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.000
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.000
SELMODRAFT_411844 Selaginella moellendorffii SELMODRAFT_411844 I 0.000
Si000842m.g Setaria italica Si000842m.g I 0.000
Si021484m.g Setaria italica Si021484m.g I 0.000
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.000
Solyc08g080580.2 Solanum lycopersicum Solyc08g080580.2 I 0.000
TCM_047091 Theobroma cacao TCM_047091 I 0.000
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.000
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.000
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.000
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.000
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.000
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.000
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.000
Ca_01884 Cicer arietinum Ca_01884 I 0.000
Ca_14925 Cicer arietinum Ca_14925 I 0.000
Cla022565 Citrullus lanatus Cla022565 I 0.000
Cla023357 Citrullus lanatus Cla023357 I 0.000
Pm002704 Prunus mume Pm002704 I 0.000
Pm005124 Prunus mume Pm005124 I 0.000
Pm018007 Prunus mume Pm018007 I 0.000
29794.m003447 Ricinus communis 29794.m003447 I 0.000
29846.m000184 Ricinus communis 29846.m000184 I 0.000
cassava9078.m1 Manihot esculenta cassava9078.m1 I 0.000
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.000
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.000
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.000
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.000
mgf006384m Mimulus guttatus mgf006384m I 0.000
mgf008601m Mimulus guttatus mgf008601m I 0.000
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.000
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.000
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.000
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.000
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.000
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.000
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.000
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.000
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.000
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.000
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.000
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.000
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.000
gene19115-v1.0-hybrid Fragaria vesca gene19115-v1.0-hybrid I 0.000
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.000
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.000
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.000
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.000
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.000
MDP0000179225 Malus domestica MDP0000179225 I 0.000
MDP0000295807 Malus domestica MDP0000295807 I 0.000
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.000
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.000
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.000
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.000
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.000
Pavir.J07395 Panicum virgatum Pavir.J07395 I 0.000
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.000
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.000
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.000
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.000
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.000
PK22174.1 Cannabis sativa PK22174.1 I 0.000
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.000
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.000
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.000
Contig1271.1.g45 Oxytricha trifallax Contig1271.1.g45 N 0.000