POPTR_0016s01980 (Populus trichocarpa)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 POPTR_0016s01980 T180109_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.889 0.889
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.889 0.889
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s01980.1 FAR1 85 187

Links

Other FAR1 family TFs
Other Populus trichocarpa TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FHY3 Arabidopsis thaliana AT3G22170 D 0.889
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.944
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.967
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.922
mgf009829m Mimulus guttatus mgf009829m I 0.856
mgf014333m Mimulus guttatus mgf014333m I 0.856
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.700
Bostr.19424s0443 Boechera stricta Bostr.19424s0443 I 0.878
Cagra.2420s0008 Capsella grandiflora Cagra.2420s0008 I 0.878
Carubv10013009m.g Capsella rubella Carubv10013009m.g I 0.878
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.900
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.711
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.967
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.944
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.711
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.967
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.744
MDP0000286803 Malus domestica MDP0000286803 I 0.956
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.989
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.750
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.978
Thhalv10020053m.g Eutrema salsugineum Thhalv10020053m.g I 0.867
PK04639.1 Cannabis sativa PK04639.1 I 0.722
PK08903.1 Cannabis sativa PK08903.1 I 0.933
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.889
Bo1g105420 Brassica oleracea Bo1g105420 I 0.789
Bo5g098280 Brassica oleracea Bo5g098280 I 0.833
Bra031330 Brassica rapa Bra031330 I 0.833
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.956
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.956
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.700
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.739
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.967
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.956
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.711
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.967
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.700
TCM_002030 Theobroma cacao TCM_002030 I 0.733
TCM_013043 Theobroma cacao TCM_013043 I 0.944
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.933
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.733
Pm014858 Prunus mume Pm014858 I 0.711
Pm014859 Prunus mume Pm014859 I 0.956
30106.m000672 Ricinus communis 30106.m000672 I 0.756
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.744
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.967