CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo7g030310
(
Brassica oleracea
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Bo7g030310
T199944_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo7g030310.1
GRAS
42
405
LKWVLVACAKAISENNLLLAQWCIGELRGMVSISGEPIQRLGAYMLEGLVVRLAATGSSIYKSLQSREPESYDFLSYVYLLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGEGSQWVALIQAFAARPGGAPNIRITGIGDGSKLVAVRRRLEKLAKKFDVPFKFHAVSASSYKVEVENLDVRIGEALGVNFAYMLHHLPDESVSTENHRDRVLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVILPRNHKERINVEQHCLASDVVNIIACEGAERIVRHELLGKWKSRFSMAGFVPYPLSSVVSATIRSLLKDYNNGYGIEERDGALCLGWMDRILVSSCAWK
Links
Other
GRAS
family TFs
Other
Brassica oleracea
TFs
46 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gene21592-v1.0-hybrid
Fragaria vesca
gene21592-v1.0-hybrid
N
0.725
Cucsa.120390
Cucumis sativus
Cucsa.120390
N
0.717
Aquca_005_00234
Aquilegia coerulea
Aquca_005_00234
N
0.709
Bostr.19424s0023
Boechera stricta
Bostr.19424s0023
N
0.896
Bostr.5224s0004
Boechera stricta
Bostr.5224s0004
N
0.714
Cagra.1158s0007
Capsella grandiflora
Cagra.1158s0007
N
0.874
Cagra.2766s0005
Capsella grandiflora
Cagra.2766s0005
N
0.715
Carubv10015685m.g
Capsella rubella
Carubv10015685m.g
N
0.890
Carubv10026289m.g
Capsella rubella
Carubv10026289m.g
N
0.715
Ciclev10014845m.g
Citrus clementina
Ciclev10014845m.g
N
0.729
Eucgr.A01051
Eucalyptus grandis
Eucgr.A01051
N
0.702
evm.TU.supercontig_136.17
Carica papaya
evm.TU.supercontig_136.17
N
0.721
cassava34106.m1
Manihot esculenta
cassava34106.m1
N
0.726
Gorai.001G192800
Gossypium raimondii
Gorai.001G192800
N
0.734
Gorai.007G167000
Gossypium raimondii
Gorai.007G167000
N
0.734
Lus10006369.g
Linum usitatissimum
Lus10006369.g
N
0.707
Lus10012323.g
Linum usitatissimum
Lus10012323.g
N
0.708
MDP0000152670
Malus domestica
MDP0000152670
N
0.709
MDP0000804652
Malus domestica
MDP0000804652
N
0.717
orange1.1g009376m.g
Citrus sinensis
orange1.1g009376m.g
N
0.729
SapurV1A.0054s0160
Salix purpurea
SapurV1A.0054s0160
N
0.736
Thhalv10002541m.g
Eutrema salsugineum
Thhalv10002541m.g
N
0.901
Thhalv10004053m.g
Eutrema salsugineum
Thhalv10004053m.g
N
0.700
POPTR_0014s16230
Populus trichocarpa
POPTR_0014s16230
N
0.721
PAT1
Arabidopsis thaliana
AT5G48150
N
0.723
Bo2g149670
Brassica oleracea
Bo2g149670
N
0.721
Bo9g009240
Brassica oleracea
Bo9g009240
N
0.720
Bo9g009260
Brassica oleracea
Bo9g009260
N
0.710
Bra015156
Brassica rapa
Bra015156
N
0.931
Bra020715
Brassica rapa
Bra020715
N
0.731
Bra036185
Brassica rapa
Bra036185
N
0.710
GLYMA02G47640
Glycine max
GLYMA02G47640
N
0.726
GLYMA14G01020
Glycine max
GLYMA14G01020
N
0.742
MTR_5g097480
Medicago truncatula
MTR_5g097480
N
0.736
PGSC0003DMG400006132
Solanum tuberosum
PGSC0003DMG400006132
N
0.713
SCL21
Arabidopsis thaliana
AT2G04890
N
0.896
PRUPE_ppa003702mg
Prunus persica
PRUPE_ppa003702mg
N
0.710
SCL21
Arabidopsis lyrata
scaffold_303269.1
N
0.887
PAT1
Arabidopsis lyrata
scaffold_801100.1
N
0.717
Solyc07g047950.1
Solanum lycopersicum
Solyc07g047950.1
N
0.713
TCM_002319
Theobroma cacao
TCM_002319
N
0.734
VIT_12s0057g00560
Vitis vinifera
VIT_12s0057g00560
N
0.734
Ca_09786
Cicer arietinum
Ca_09786
N
0.715
Cla001429
Citrullus lanatus
Cla001429
N
0.702
Pm015021
Prunus mume
Pm015021
N
0.707
29949.m000124
Ricinus communis
29949.m000124
N
0.728