fgenesh1_pg.scaffold_15000027 (Physcomitrella patens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 fgenesh1_pg.scaffold_15000027 T227478_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.637 0.714
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.625 0.536
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_15000027 Homeodomain 313 368

Links

Other Homeodomain family TFs
Other Physcomitrella patens TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RLT1 Arabidopsis thaliana AT1G28420 D 0.637
PK25011.1 Cannabis sativa PK25011.1 D 0.625
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.607
RLT2 Arabidopsis thaliana AT5G44180 I 0.614
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.659
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.637
Bo3g143570 Brassica oleracea Bo3g143570 I 0.636
Bo5g055970 Brassica oleracea Bo5g055970 I 0.636
Bo7g067190 Brassica oleracea Bo7g067190 I 0.642
Bra010869 Brassica rapa Bra010869 I 0.636
Bra032908 Brassica rapa Bra032908 I 0.635
Bra033725 Brassica rapa Bra033725 I 0.641
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.630
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.625
F775_01844 Aegilops tauschii F775_01844 I 0.625
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.637
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.631
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.607
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.633
GLYMA08G41330 Glycine max GLYMA08G41330 I 0.675
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.633
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.633
GLYMA18G14910 Glycine max GLYMA18G14910 I 0.675
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.627
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.651
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.651
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.627
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.616
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.659
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.637
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.625
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.633
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.633
OB01G35240 Oryza brachyantha OB01G35240 I 0.627
OBART05G25730 Oryza barthii OBART05G25730 I 0.637
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.659
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.637
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.659
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.659
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.637
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.659
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.637
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.659
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.637
OS01G0672201 Oryza sativa OS01G0672201 I 0.659
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.640
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.622
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.641
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.633
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.627
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.627
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.618
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.618
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.638
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.638
Si004333m.g Setaria italica Si004333m.g I 0.627
Si020949m.g Setaria italica Si020949m.g I 0.649
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.611
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.629
TCM_008214 Theobroma cacao TCM_008214 I 0.641
TCM_029805 Theobroma cacao TCM_029805 I 0.617
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I 0.629
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.632
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.629
Ca_00337 Cicer arietinum Ca_00337 I 0.633
Ca_06343 Cicer arietinum Ca_06343 I 0.633
Ca_11272 Cicer arietinum Ca_11272 I 0.628
Cla009803 Citrullus lanatus Cla009803 I 0.633
Pm010098 Prunus mume Pm010098 I 0.633
29983.m003128 Ricinus communis 29983.m003128 I 0.641
30190.m011307 Ricinus communis 30190.m011307 I 0.613
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.633
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.641
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.633
mgf006635m Mimulus guttatus mgf006635m I 0.617
mgf006858m Mimulus guttatus mgf006858m I 0.632
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.628
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.639
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.607
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.631
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.630
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.639
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.630
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.641
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.633
Ciclev10014928m.g Citrus clementina Ciclev10014928m.g I 0.629
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.610
Eucgr.J00701 Eucalyptus grandis Eucgr.J00701 I 0.655
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.641
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.633
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.641
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.629
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.633
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.641
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.617
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.617
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.632
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.609
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.632
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.641
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.609
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.641
MDP0000192108 Malus domestica MDP0000192108 I 0.633
MDP0000288192 Malus domestica MDP0000288192 I 0.633
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.633
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.641
orange1.1g010311m.g Citrus sinensis orange1.1g010311m.g I 0.629
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.649
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.649
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.633
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.632
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.640
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.641
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.640
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.640
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.631
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.638
PK06068.1 Cannabis sativa PK06068.1 I 0.629
PK13272.1 Cannabis sativa PK13272.1 I 0.633