Gorai.013G254100 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.013G254100 T228818_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.628 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G254100.1 Homeodomain 20 76
Gorai.013G254100.2 Homeodomain 20 76
Gorai.013G254100.3 Homeodomain 20 76
Gorai.013G254100.4 Homeodomain 20 76
Gorai.013G254100.5 Homeodomain 1 29

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK25011.1 Cannabis sativa PK25011.1 D 0.628
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I 0.707
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I 0.798
Gorai.001G134800 Gossypium raimondii Gorai.001G134800 I 0.637
PGSC0003DMG400004714 Solanum tuberosum PGSC0003DMG400004714 I 0.826
POPTR_0001s28350 Populus trichocarpa POPTR_0001s28350 I 0.746
Eucgr.J00701 Eucalyptus grandis Eucgr.J00701 I 0.620
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I 0.758
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.668
Solyc12g099760.1 Solanum lycopersicum Solyc12g099760.1 I 0.617
TCM_008214 Theobroma cacao TCM_008214 I 0.736
TCM_040945 Theobroma cacao TCM_040945 I 0.800
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I 0.600
Cla008712 Citrullus lanatus Cla008712 I 0.673
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.660
cassava16534.m1 Manihot esculenta cassava16534.m1 I 0.615
MDP0000207866 Malus domestica MDP0000207866 I 0.671
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.867
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.627
SapurV1A.0106s0340 Salix purpurea SapurV1A.0106s0340 I 0.758
GLYMA18G14910 Glycine max GLYMA18G14910 I 0.633
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.661
GLYMA08G41330 Glycine max GLYMA08G41330 I 0.633
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.661
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.661
scaffold_603934.1 Arabidopsis lyrata scaffold_603934.1 N 0.795
gene14635-v1.0-hybrid Fragaria vesca gene14635-v1.0-hybrid N 0.829
LjSGA_012738.1 Lotus japonicus LjSGA_012738.1 N 0.816
BTMF_0000474601 Brugia timori BTMF_0000474601 N 0.603
D915_07707 Fasciola hepatica D915_07707 N 0.638
DICVIV_12877 Dictyocaulus viviparus DICVIV_12877 N 0.636
OESDEN_18963 Oesophagostomum dentatum OESDEN_18963 N 0.636
OBART01G26120 Oryza barthii OBART01G26120 N 0.642
Bo9g006410 Brassica oleracea Bo9g006410 N 0.795
CABZ01080370.1 Danio rerio ENSDARG00000102550 N 0.600
ENSDNOG00000038094 Dasypus novemcinctus ENSDNOG00000038094 N 0.636
GLYMA01G06403 Glycine max GLYMA01G06403 N 0.620
GLYMA08G38930 Glycine max GLYMA08G38930 N 0.810
GSMUA_Achr8G27210_001 Musa acuminata GSMUA_Achr8G27210_001 N 0.636
GSMUA_Achr9G06610_001 Musa acuminata GSMUA_Achr9G06610_001 N 0.636
OB01G35260 Oryza brachyantha OB01G35260 N 0.642
cassava31027.valid.m1 Manihot esculenta cassava31027.valid.m1 N 0.831
OBART05G11630 Oryza barthii OBART05G11630 N 0.649
OLONG_014924 Oryza longistaminata OLONG_014924 N 0.642
ONIVA05G12010 Oryza nivara ONIVA05G12010 N 0.636
ORUFI05G12600 Oryza rufipogon ORUFI05G12600 N 0.741
POPTR_0004s04840 Populus trichocarpa POPTR_0004s04840 N 0.636
BGIOSGA019617 Oryza indica BGIOSGA019617 N 0.636
Pm012761 Prunus mume Pm012761 N 0.802