SVE_1583100 (Strongyloides venezuelensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SVE_1583100 T236584_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.846 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.846 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.846 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.846 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.846 0.930
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.846 0.912
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.846 0.912
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.846 0.912
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.846 0.912
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.845 0.895
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.845 0.895
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.845 0.895
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.845 0.895
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.845 0.895
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.845 0.895
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.845 0.895
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.839 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVE_1583100.1 Homeodomain 196 252

Links

Other Homeodomain family TFs
Other Strongyloides venezuelensis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EIL1 Arabidopsis thaliana AT2G27050 D
EIN3 Arabidopsis thaliana AT3G20770 D
Q9ZWK1_TOBAC Nicotiana tabacum Q9ZWK1_TOBAC D
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I
BGIOSGA012535 Oryza indica BGIOSGA012535 I
BGIOSGA023694 Oryza indica BGIOSGA023694 I
Bo1g108650 Brassica oleracea Bo1g108650 I
Bo3g041690 Brassica oleracea Bo3g041690 I
Bo3g076180 Brassica oleracea Bo3g076180 I
Bo5g106280 Brassica oleracea Bo5g106280 I
Bra000528 Brassica rapa Bra000528 I
Bra001802 Brassica rapa Bra001802 I
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I
F775_28545 Aegilops tauschii F775_28545 I
EIN3 Arabidopsis lyrata fgenesh2_kg.3__2304__AT3G20770.1 I
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I
GLYMA02G44220 Glycine max GLYMA02G44220 I
GLYMA13G03660 Glycine max GLYMA13G03660 I
GLYMA13G03700 Glycine max GLYMA13G03700 I
GLYMA14G04550 Glycine max GLYMA14G04550 I
GLYMA20G12250 Glycine max GLYMA20G12250 I
GRMZM2G003558 Zea mays GRMZM2G003558 I
GRMZM2G033570 Zea mays GRMZM2G033570 I
GRMZM2G151811 Zea mays GRMZM2G151811 I
GRMZM2G317584 Zea mays GRMZM2G317584 I
GSMUA_Achr10G12800_001 Musa acuminata GSMUA_Achr10G12800_001 I
GSMUA_Achr2G11540_001 Musa acuminata GSMUA_Achr2G11540_001 I
GSMUA_Achr3G09440_001 Musa acuminata GSMUA_Achr3G09440_001 I
GSMUA_Achr5G27670_001 Musa acuminata GSMUA_Achr5G27670_001 I
GSMUA_Achr6G15930_001 Musa acuminata GSMUA_Achr6G15930_001 I
GSMUA_Achr8G21550_001 Musa acuminata GSMUA_Achr8G21550_001 I
GSMUA_Achr9G17080_001 Musa acuminata GSMUA_Achr9G17080_001 I
LPERR03G13760 Leersia perrieri LPERR03G13760 I
LPERR07G23570 Leersia perrieri LPERR07G23570 I
MLOC_14619 Hordeum vulgare MLOC_14619 I
MTR_3g078770 Medicago truncatula MTR_3g078770 I
MTR_5g087790 Medicago truncatula MTR_5g087790 I
OBART07G26760 Oryza barthii OBART07G26760 I
OGLUM03G15860 Oryza glumaepatula OGLUM03G15860 I
OLONG_004360 Oryza longistaminata OLONG_004360 I
OMERI03G14140 Oryza meridionalis OMERI03G14140 I
OMERI05G02190 Oryza meridionalis OMERI05G02190 I
OMERI07G23380 Oryza meridionalis OMERI07G23380 I
ONIVA03G16680 Oryza nivara ONIVA03G16680 I
ONIVA07G26490 Oryza nivara ONIVA07G26490 I
OPUNC03G15240 Oryza punctata OPUNC03G15240 I
OPUNC07G25150 Oryza punctata OPUNC07G25150 I
ORGLA03G0150600 Oryza glaberrima ORGLA03G0150600 I
ORGLA07G0211700 Oryza glaberrima ORGLA07G0211700 I
ORUFI03G16290 Oryza rufipogon ORUFI03G16290 I
ORUFI07G27710 Oryza rufipogon ORUFI07G27710 I
OS03G0324200 Oryza sativa OS03G0324200 I
OS03G0324300 Oryza sativa OS03G0324300 I
OS07G0685700 Oryza sativa OS07G0685700 I
PGSC0003DMG400005914 Solanum tuberosum PGSC0003DMG400005914 I
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I
PGSC0003DMG400027507 Solanum tuberosum PGSC0003DMG400027507 I
POPTR_0004s20830 Populus trichocarpa POPTR_0004s20830 I
POPTR_0008s01200 Populus trichocarpa POPTR_0008s01200 I
POPTR_0009s16080 Populus trichocarpa POPTR_0009s16080 I
POPTR_0010s25370 Populus trichocarpa POPTR_0010s25370 I
PRUPE_ppa003550mg Prunus persica PRUPE_ppa003550mg I
Sb01g036740 Sorghum bicolor Sb01g036740 I
Sb02g043350 Sorghum bicolor Sb02g043350 I
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I
Si029213m.g Setaria italica Si029213m.g I
Si034616m.g Setaria italica Si034616m.g I
Solyc01g009170.2 Solanum lycopersicum Solyc01g009170.2 I
Solyc01g096810.2 Solanum lycopersicum Solyc01g096810.2 I
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I
Solyc06g073730.1 Solanum lycopersicum Solyc06g073730.1 I
TCM_042022 Theobroma cacao TCM_042022 I
Traes_2BS_647C82888 Triticum aestivum Traes_2BS_647C82888 I
Traes_4AS_2BDA1260C Triticum aestivum Traes_4AS_2BDA1260C I
Traes_4BL_F34EBD618 Triticum aestivum Traes_4BL_F34EBD618 I
Traes_4DL_C083C804E Triticum aestivum Traes_4DL_C083C804E I
TRIUR3_30860 Triticum urartu TRIUR3_30860 I
VIT_06s0009g01380 Vitis vinifera VIT_06s0009g01380 I
VIT_13s0047g00250 Vitis vinifera VIT_13s0047g00250 I
Ca_07534 Cicer arietinum Ca_07534 I
Ca_10236 Cicer arietinum Ca_10236 I
Pm017009 Prunus mume Pm017009 I
29708.m000185 Ricinus communis 29708.m000185 I
cassava3620.m1 Manihot esculenta cassava3620.m1 I
Cucsa.142750 Cucumis sativus Cucsa.142750 I
Cucsa.364340 Cucumis sativus Cucsa.364340 I
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I
mgf012394m Mimulus guttatus mgf012394m I
mgf015996m Mimulus guttatus mgf015996m I
mgf018950m Mimulus guttatus mgf018950m I
Aquca_014_00938 Aquilegia coerulea Aquca_014_00938 I
Bostr.19424s0573 Boechera stricta Bostr.19424s0573 I
Bostr.29505s0037 Boechera stricta Bostr.29505s0037 I
Cagra.2243s0007 Capsella grandiflora Cagra.2243s0007 I
Cagra.6016s0001 Capsella grandiflora Cagra.6016s0001 I
Carubv10013213m.g Capsella rubella Carubv10013213m.g I
Carubv10022879m.g Capsella rubella Carubv10022879m.g I
Ciclev10000608m.g Citrus clementina Ciclev10000608m.g I
Ciclev10000617m.g Citrus clementina Ciclev10000617m.g I
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I
Eucgr.G02632 Eucalyptus grandis Eucgr.G02632 I
Eucgr.J00631 Eucalyptus grandis Eucgr.J00631 I
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I
gene00379-v1.0-hybrid Fragaria vesca gene00379-v1.0-hybrid I
gene25474-v1.0-hybrid Fragaria vesca gene25474-v1.0-hybrid I
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I
Gorai.004G227800 Gossypium raimondii Gorai.004G227800 I
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I
Gorai.013G266300 Gossypium raimondii Gorai.013G266300 I
MDP0000202831 Malus domestica MDP0000202831 I
MDP0000212881 Malus domestica MDP0000212881 I
MDP0000306498 Malus domestica MDP0000306498 I
MDP0000564884 Malus domestica MDP0000564884 I
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I
orange1.1g007174m.g Citrus sinensis orange1.1g007174m.g I
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I
Pavir.Bb03705 Panicum virgatum Pavir.Bb03705 I
Pavir.Ia03450 Panicum virgatum Pavir.Ia03450 I
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I
Pavir.J01001 Panicum virgatum Pavir.J01001 I
SapurV1A.0036s0870 Salix purpurea SapurV1A.0036s0870 I
SapurV1A.0070s0670 Salix purpurea SapurV1A.0070s0670 I
SapurV1A.0561s0140 Salix purpurea SapurV1A.0561s0140 I
SapurV1A.0615s0150 Salix purpurea SapurV1A.0615s0150 I
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I
Thhalv10020292m.g Eutrema salsugineum Thhalv10020292m.g I
PK01239.1 Cannabis sativa PK01239.1 I
PK13351.1 Cannabis sativa PK13351.1 I
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I
PDK_20s1443543g001 Phoenix dactylifera PDK_20s1443543g001 I