chr1.LjT38H23.30.nd (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 chr1.LjT38H23.30.nd T247410_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.737 0.737
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.737 0.737
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.737 0.737
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.737 0.737
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.737 0.737
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.737 0.737
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.LjT38H23.30.nd LOB 56 155

Links

Other LOB family TFs
Other Lotus japonicus TFs

259 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD16 Arabidopsis thaliana AT2G42430 D 0.737
LBD18 Arabidopsis thaliana AT2G45420 D 0.737
LBD30 Arabidopsis thaliana AT4G00220 D 0.737
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.747
LBD20 Arabidopsis thaliana AT3G03760 I 0.879
LBD29 Arabidopsis thaliana AT3G58190 I 0.707
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.727
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.737
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.707
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.717
Bo1g153580 Brassica oleracea Bo1g153580 I 0.879
Bo2g097560 Brassica oleracea Bo2g097560 I 0.737
Bo3g036000 Brassica oleracea Bo3g036000 I 0.753
Bo3g036030 Brassica oleracea Bo3g036030 I 0.717
Bo4g016000 Brassica oleracea Bo4g016000 I 0.737
Bo4g024620 Brassica oleracea Bo4g024620 I 0.737
Bo4g191530 Brassica oleracea Bo4g191530 I 0.737
Bo4g195520 Brassica oleracea Bo4g195520 I 0.737
Bo9g002150 Brassica oleracea Bo9g002150 I 0.727
Bo9g002160 Brassica oleracea Bo9g002160 I 0.747
Bra000257 Brassica rapa Bra000257 I 0.717
Bra004693 Brassica rapa Bra004693 I 0.737
Bra004910 Brassica rapa Bra004910 I 0.737
Bra008514 Brassica rapa Bra008514 I 0.737
Bra016877 Brassica rapa Bra016877 I 0.727
Bra036436 Brassica rapa Bra036436 I 0.879
Bra037322 Brassica rapa Bra037322 I 0.727
Bra037323 Brassica rapa Bra037323 I 0.747
Bra040311 Brassica rapa Bra040311 I 0.747
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.747
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.707
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.707
F775_02052 Aegilops tauschii F775_02052 I 0.717
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.879
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.737
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.717
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.737
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.737
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.818
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.758
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.727
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.737
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.707
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.717
GLYMA10G11031 Glycine max GLYMA10G11031 I 0.828
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.717
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.707
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.828
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.737
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.727
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.737
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.707
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.737
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.737
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.707
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.747
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.707
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.737
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.707
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.707
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.758
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.737
GSMUA_Achr9G10530_001 Musa acuminata GSMUA_Achr9G10530_001 I 0.788
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.768
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.707
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.707
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.737
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.707
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.709
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.737
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.735
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.737
MTR_6g027710 Medicago truncatula MTR_6g027710 I 0.788
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.737
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.737
OB02G44330 Oryza brachyantha OB02G44330 I 0.727
OB03G13890 Oryza brachyantha OB03G13890 I 0.707
OB08G30680 Oryza brachyantha OB08G30680 I 0.707
OB10G12360 Oryza brachyantha OB10G12360 I 0.727
OBART03G03830 Oryza barthii OBART03G03830 I 0.707
OBART03G10450 Oryza barthii OBART03G10450 I 0.737
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.727
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.737
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.717
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.756
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.727
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.737
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.707
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.727
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.707
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.717
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.717
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.707
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.737
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.717
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.727
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.707
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.737
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.717
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.727
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.707
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.737
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.717
OS02G0820500 Oryza sativa OS02G0820500 I 0.727
OS03G0149100 Oryza sativa OS03G0149100 I 0.707
OS03G0246900 Oryza sativa OS03G0246900 I 0.737
OS10G0162600 Oryza sativa OS10G0162600 I 0.717
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.758
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.707
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.899
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.745
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.717
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.737
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.747
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.899
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.731
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.778
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.707
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.707
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.879
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.747
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.737
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.707
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.727
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.707
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.747
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.793
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.793
Si019578m.g Setaria italica Si019578m.g I 0.717
Si040019m.g Setaria italica Si040019m.g I 0.707
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.758
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.889
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.747
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.707
TCM_004103 Theobroma cacao TCM_004103 I 0.716
TCM_004106 Theobroma cacao TCM_004106 I 0.727
TCM_005496 Theobroma cacao TCM_005496 I 0.761
TCM_025849 Theobroma cacao TCM_025849 I 0.889
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.707
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.737
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.727
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.707
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.707
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.737
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.717
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.747
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.889
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.747
Ca_07763 Cicer arietinum Ca_07763 I 0.717
Ca_12213 Cicer arietinum Ca_12213 I 0.737
Ca_19716 Cicer arietinum Ca_19716 I 0.828
Cla002965 Citrullus lanatus Cla002965 I 0.828
Cla006087 Citrullus lanatus Cla006087 I 0.707
Cla006088 Citrullus lanatus Cla006088 I 0.747
Cla007068 Citrullus lanatus Cla007068 I 0.768
Pm017935 Prunus mume Pm017935 I 0.717
Pm017936 Prunus mume Pm017936 I 0.778
Pm020627 Prunus mume Pm020627 I 0.707
Pm020629 Prunus mume Pm020629 I 0.747
Pm028642 Prunus mume Pm028642 I 0.879
28428.m000040 Ricinus communis 28428.m000040 I 0.717
29883.m002035 Ricinus communis 29883.m002035 I 0.737
30072.m000955 Ricinus communis 30072.m000955 I 0.929
30174.m008898 Ricinus communis 30174.m008898 I 0.768
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.919
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.747
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.909
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.778
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.768
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.707
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.717
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.747
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.707
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.828
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.768
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.828
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.784
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.798
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.818
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.828
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.818
mgf006429m Mimulus guttatus mgf006429m I 0.859
mgf020773m Mimulus guttatus mgf020773m I 0.717
mgf026090m Mimulus guttatus mgf026090m I 0.712
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.899
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.768
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.727
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.737
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.879
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.737
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.737
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.737
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.747
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.879
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.737
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.747
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.879
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.737
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.737
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.879
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.768
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.707
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.747
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.707
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.778
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.848
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.727
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.717
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.768
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.747
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.717
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.889
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.717
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.737
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.707
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.717
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.758
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.717
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.717
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.717
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.859
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.778
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.717
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.707
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.717
MDP0000131964 Malus domestica MDP0000131964 I 0.727
MDP0000145761 Malus domestica MDP0000145761 I 0.727
MDP0000159122 Malus domestica MDP0000159122 I 0.753
MDP0000254224 Malus domestica MDP0000254224 I 0.707
MDP0000322059 Malus domestica MDP0000322059 I 0.899
MDP0000429067 Malus domestica MDP0000429067 I 0.707
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.707
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.768
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.747
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.879
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.727
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.727
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.707
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.707
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.727
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.737
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.727
SapurV1A.0006s0970 Salix purpurea SapurV1A.0006s0970 I 0.707
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.727
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.758
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.737
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.758
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.876
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.737
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.737
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.879
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.707
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.737
PK23380.1 Cannabis sativa PK23380.1 I 0.791
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.707
chr2.LjT13P17.280.nd Lotus japonicus chr2.LjT13P17.280.nd I 0.778
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.768
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.727