Bra021536 (Brassica rapa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bra021536 T248026_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.828 0.712
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra021536.1-P MADF 77 152

Links

Other MADF family TFs
Other Brassica rapa TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRB1 Arabidopsis thaliana AT1G49950 D
AT1G72740 Arabidopsis thaliana AT1G72740 D
TRB2 Arabidopsis thaliana AT5G67580 D
OS01G0708000 Oryza sativa OS01G0708000 D
PK06103.1 Cannabis sativa PK06103.1 D
AMTR_s00007p00193000 Amborella trichopoda AMTR_s00007p00193000 I
AMTR_s00036p00166880 Amborella trichopoda AMTR_s00036p00166880 I
AT1G17520 Arabidopsis thaliana AT1G17520 I
TRB3 Arabidopsis thaliana AT3G49850 I
BGIOSGA003871 Oryza indica BGIOSGA003871 I
BGIOSGA004300 Oryza indica BGIOSGA004300 I
BGIOSGA035841 Oryza indica BGIOSGA035841 I
Bo1g081300 Brassica oleracea Bo1g081300 I
Bo3g096520 Brassica oleracea Bo3g096520 I
Bo5g077530 Brassica oleracea Bo5g077530 I
Bo6g018740 Brassica oleracea Bo6g018740 I
Bo9g019040 Brassica oleracea Bo9g019040 I
Bra018818 Brassica rapa Bra018818 I
Bra024438 Brassica rapa Bra024438 I
Bra029978 Brassica rapa Bra029978 I
Bra030992 Brassica rapa Bra030992 I
Bra037837 Brassica rapa Bra037837 I
Bra037839 Brassica rapa Bra037839 I
Bra039650 Brassica rapa Bra039650 I
BRADI2G42240 Brachypodium distachyon BRADI2G42240 I
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I
BRADI4G01770 Brachypodium distachyon BRADI4G01770 I
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I
GLYMA01G40220 Glycine max GLYMA01G40220 I
GLYMA05G22500 Glycine max GLYMA05G22500 I
GLYMA09G03390 Glycine max GLYMA09G03390 I
GLYMA11G05070 Glycine max GLYMA11G05070 I
GLYMA15G14320 Glycine max GLYMA15G14320 I
GLYMA17G17370 Glycine max GLYMA17G17370 I
GRMZM2G108424 Zea mays GRMZM2G108424 I
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I
GSMUA_Achr6G30000_001 Musa acuminata GSMUA_Achr6G30000_001 I
GSMUA_Achr6G31260_001 Musa acuminata GSMUA_Achr6G31260_001 I
GSMUA_Achr7G01090_001 Musa acuminata GSMUA_Achr7G01090_001 I
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I
LPERR01G18090 Leersia perrieri LPERR01G18090 I
LPERR01G24270 Leersia perrieri LPERR01G24270 I
MLOC_10278 Hordeum vulgare MLOC_10278 I
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I
MTR_1g041765 Medicago truncatula MTR_1g041765 I
MTR_2g031870 Medicago truncatula MTR_2g031870 I
MTR_2g099610 Medicago truncatula MTR_2g099610 I
MTR_4g097130 Medicago truncatula MTR_4g097130 I
MTR_5g015340 Medicago truncatula MTR_5g015340 I
MTR_8g494240 Medicago truncatula MTR_8g494240 I
OB01G30760 Oryza brachyantha OB01G30760 I
OB01G37330 Oryza brachyantha OB01G37330 I
OB12G25520 Oryza brachyantha OB12G25520 I
OBART01G21150 Oryza barthii OBART01G21150 I
OBART01G28260 Oryza barthii OBART01G28260 I
OBART12G18680 Oryza barthii OBART12G18680 I
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I
OGLUM12G20330 Oryza glumaepatula OGLUM12G20330 I
OLONG_008332 Oryza longistaminata OLONG_008332 I
OLONG_008666 Oryza longistaminata OLONG_008666 I
OLONG_011068 Oryza longistaminata OLONG_011068 I
OMERI01G19490 Oryza meridionalis OMERI01G19490 I
OMERI01G19510 Oryza meridionalis OMERI01G19510 I
OMERI05G07460 Oryza meridionalis OMERI05G07460 I
OMERI12G14000 Oryza meridionalis OMERI12G14000 I
ONIVA01G23780 Oryza nivara ONIVA01G23780 I
ONIVA01G32190 Oryza nivara ONIVA01G32190 I
ONIVA12G17630 Oryza nivara ONIVA12G17630 I
OPUNC01G21220 Oryza punctata OPUNC01G21220 I
OPUNC01G28080 Oryza punctata OPUNC01G28080 I
OPUNC12G16890 Oryza punctata OPUNC12G16890 I
ORGLA01G0168300 Oryza glaberrima ORGLA01G0168300 I
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I
ORGLA12G0159400 Oryza glaberrima ORGLA12G0159400 I
ORUFI01G23880 Oryza rufipogon ORUFI01G23880 I
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I
ORUFI12G20880 Oryza rufipogon ORUFI12G20880 I
OS01G0589300 Oryza sativa OS01G0589300 I
OS12G0613300 Oryza sativa OS12G0613300 I
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I
POPTR_0006s14940 Populus trichocarpa POPTR_0006s14940 I
POPTR_0007s14920 Populus trichocarpa POPTR_0007s14920 I
POPTR_0009s09020 Populus trichocarpa POPTR_0009s09020 I
POPTR_0014s01010 Populus trichocarpa POPTR_0014s01010 I
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I
PRUPE_ppa007796mg Prunus persica PRUPE_ppa007796mg I
PRUPE_ppa009220mg Prunus persica PRUPE_ppa009220mg I
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I
Sb03g032530 Sorghum bicolor Sb03g032530 I
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I
SELMODRAFT_413266 Selaginella moellendorffii SELMODRAFT_413266 I
SELMODRAFT_426759 Selaginella moellendorffii SELMODRAFT_426759 I
SELMODRAFT_443975 Selaginella moellendorffii SELMODRAFT_443975 I
SELMODRAFT_49296 Selaginella moellendorffii SELMODRAFT_49296 I
SELMODRAFT_49297 Selaginella moellendorffii SELMODRAFT_49297 I
SELMODRAFT_49312 Selaginella moellendorffii SELMODRAFT_49312 I
Si002403m.g Setaria italica Si002403m.g I
Si002467m.g Setaria italica Si002467m.g I
Solyc01g106940.2 Solanum lycopersicum Solyc01g106940.2 I
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I
Solyc07g040920.2 Solanum lycopersicum Solyc07g040920.2 I
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I
TCM_000807 Theobroma cacao TCM_000807 I
TCM_007242 Theobroma cacao TCM_007242 I
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I
Traes_5AS_8756ECB5A Triticum aestivum Traes_5AS_8756ECB5A I
Traes_5BS_EB206B8BC Triticum aestivum Traes_5BS_EB206B8BC I
Traes_5DS_3EE830A43 Triticum aestivum Traes_5DS_3EE830A43 I
TRIUR3_10613 Triticum urartu TRIUR3_10613 I
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I
TRB1 Vitis vinifera VIT_03s0091g01030 I
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I
VIT_11s0016g01890 Vitis vinifera VIT_11s0016g01890 I
Ca_02232 Cicer arietinum Ca_02232 I
Ca_02722 Cicer arietinum Ca_02722 I
Ca_08043 Cicer arietinum Ca_08043 I
Ca_09355 Cicer arietinum Ca_09355 I
Cla006547 Citrullus lanatus Cla006547 I
Cla014248 Citrullus lanatus Cla014248 I
Pm002374 Prunus mume Pm002374 I
Pm021139 Prunus mume Pm021139 I
Pm027209 Prunus mume Pm027209 I
29661.m000926 Ricinus communis 29661.m000926 I
29812.m000204 Ricinus communis 29812.m000204 I
29912.m005376 Ricinus communis 29912.m005376 I
cassava19326.valid.m1 Manihot esculenta cassava19326.valid.m1 I
cassava37744.valid.m1 Manihot esculenta cassava37744.valid.m1 I
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I
Cucsa.103240 Cucumis sativus Cucsa.103240 I
Cucsa.298390 Cucumis sativus Cucsa.298390 I
EuGene.0000030935 Micromonas pusilla EuGene.0000030935 I
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I
mgf000125m Mimulus guttatus mgf000125m I
mgf004823m Mimulus guttatus mgf004823m I
mgf009594m Mimulus guttatus mgf009594m I
mgf010975m Mimulus guttatus mgf010975m I
mgf011386m Mimulus guttatus mgf011386m I
Aquca_001_00028 Aquilegia coerulea Aquca_001_00028 I
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I
Aquca_060_00026 Aquilegia coerulea Aquca_060_00026 I
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I
Carubv10009836m.g Capsella rubella Carubv10009836m.g I
Carubv10017722m.g Capsella rubella Carubv10017722m.g I
Carubv10026874m.g Capsella rubella Carubv10026874m.g I
Ciclev10009173m.g Citrus clementina Ciclev10009173m.g I
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I
Ciclev10028926m.g Citrus clementina Ciclev10028926m.g I
Eucgr.C00865 Eucalyptus grandis Eucgr.C00865 I
Eucgr.H02312 Eucalyptus grandis Eucgr.H02312 I
Eucgr.I01053 Eucalyptus grandis Eucgr.I01053 I
EuGene.0500010080 Micromonas sp RCC299 EuGene.0500010080 I
evm.TU.supercontig_25.81 Carica papaya evm.TU.supercontig_25.81 I
gene05764-v1.0-hybrid Fragaria vesca gene05764-v1.0-hybrid I
gene07496-v1.0-hybrid Fragaria vesca gene07496-v1.0-hybrid I
gene12682-v1.0-hybrid Fragaria vesca gene12682-v1.0-hybrid I
gene25445-v1.0-hybrid Fragaria vesca gene25445-v1.0-hybrid I
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I
Gorai.005G230800 Gossypium raimondii Gorai.005G230800 I
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I
Lus10011546.g Linum usitatissimum Lus10011546.g I
Lus10012092.g Linum usitatissimum Lus10012092.g I
Lus10014653.g Linum usitatissimum Lus10014653.g I
Lus10019260.g Linum usitatissimum Lus10019260.g I
Lus10025203.g Linum usitatissimum Lus10025203.g I
Lus10027621.g Linum usitatissimum Lus10027621.g I
Lus10030935.g Linum usitatissimum Lus10030935.g I
Lus10033775.g Linum usitatissimum Lus10033775.g I
Lus10040111.g Linum usitatissimum Lus10040111.g I
MDP0000234807 Malus domestica MDP0000234807 I
MDP0000239354 Malus domestica MDP0000239354 I
MDP0000265359 Malus domestica MDP0000265359 I
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I
orange1.1g022048m.g Citrus sinensis orange1.1g022048m.g I
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I
Pavir.Ea02064 Panicum virgatum Pavir.Ea02064 I
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I
Pavir.Eb02802 Panicum virgatum Pavir.Eb02802 I
Pavir.J27218 Panicum virgatum Pavir.J27218 I
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I
SapurV1A.0019s0460 Salix purpurea SapurV1A.0019s0460 I
SapurV1A.0087s0150 Salix purpurea SapurV1A.0087s0150 I
SapurV1A.0108s0150 Salix purpurea SapurV1A.0108s0150 I
SapurV1A.0235s0100 Salix purpurea SapurV1A.0235s0100 I
SapurV1A.1368s0050 Salix purpurea SapurV1A.1368s0050 I
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I
PK00568.1 Cannabis sativa PK00568.1 I
PK19870.1 Cannabis sativa PK19870.1 I
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I
LjT25P15.150.nd Lotus japonicus LjT25P15.150.nd I
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I