COCSADRAFT_191180 (Bipolaris sorokiniana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 COCSADRAFT_191180 T253516_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.750 0.750
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.750 0.750
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.750 0.750
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EMD62901 MADS box 10 57

Links

Other MADS box family TFs
Other Bipolaris sorokiniana TFs

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10010024m.g Capsella rubella Carubv10010024m.g N
TCM_011795 Theobroma cacao TCM_011795 N
Traes_4AL_FE94301FD Triticum aestivum Traes_4AL_FE94301FD N
Traes_7DS_B1FD1C84F Triticum aestivum Traes_7DS_B1FD1C84F N
VIT_01s0026g01720 Vitis vinifera VIT_01s0026g01720 N
Ca_24297 Cicer arietinum Ca_24297 N
Cla022217 Citrullus lanatus Cla022217 N
Pm006558 Prunus mume Pm006558 N
29736.m002027 Ricinus communis 29736.m002027 N
cassava35817.valid.m1 Manihot esculenta cassava35817.valid.m1 N
Cucsa.005520 Cucumis sativus Cucsa.005520 N
mgf002465m Mimulus guttatus mgf002465m N
Aquca_002_00510 Aquilegia coerulea Aquca_002_00510 N
Bostr.0556s0088 Boechera stricta Bostr.0556s0088 N
Cagra.0534s0030 Capsella grandiflora Cagra.0534s0030 N
Cagra.3501s0060 Capsella grandiflora Cagra.3501s0060 N
Solyc05g007100.2 Solanum lycopersicum Solyc05g007100.2 N
Carubv10017841m.g Capsella rubella Carubv10017841m.g N
Ciclev10032427m.g Citrus clementina Ciclev10032427m.g N
Eucgr.G02539 Eucalyptus grandis Eucgr.G02539 N
evm.TU.supercontig_1007.4 Carica papaya evm.TU.supercontig_1007.4 N
Gorai.013G077400 Gossypium raimondii Gorai.013G077400 N
Lus10036723.g Linum usitatissimum Lus10036723.g N
MDP0000268451 Malus domestica MDP0000268451 N
orange1.1g024467m.g Citrus sinensis orange1.1g024467m.g N
Pavir.Da02402 Panicum virgatum Pavir.Da02402 N
Pavir.Db02235 Panicum virgatum Pavir.Db02235 N
SapurV1A.0609s0180 Salix purpurea SapurV1A.0609s0180 N
Thhalv10004763m.g Eutrema salsugineum Thhalv10004763m.g N
PK22670.1 Cannabis sativa PK22670.1 N
LjSGA_053590.1 Lotus japonicus LjSGA_053590.1 N
PDK_20s1701491g001 Phoenix dactylifera PDK_20s1701491g001 N
MLOC_11586 Hordeum vulgare MLOC_11586 N
WHY1 Arabidopsis thaliana AT1G14410 N
WHY3 Arabidopsis thaliana AT2G02740 N
BGIOSGA022297 Oryza indica BGIOSGA022297 N
Bo7g080560 Brassica oleracea Bo7g080560 N
Bo8g066030 Brassica oleracea Bo8g066030 N
Bra016702 Brassica rapa Bra016702 N
Bra024809 Brassica rapa Bra024809 N
BRADI1G51040 Brachypodium distachyon BRADI1G51040 N
ATWHY1 Arabidopsis lyrata fgenesh2_kg.1__1569__AT1G14410.1 N
ATWHY3 Arabidopsis lyrata fgenesh2_kg.5__172__AT2G02740.1 N
GLYMA08G40850 Glycine max GLYMA08G40850 N
GLYMA18G16200 Glycine max GLYMA18G16200 N
GRMZM2G155662 Zea mays GRMZM2G155662 N
GSMUA_Achr10G21100_001 Musa acuminata GSMUA_Achr10G21100_001 N
LPERR06G02670 Leersia perrieri LPERR06G02670 N
AMTR_s00133p00020030 Amborella trichopoda AMTR_s00133p00020030 N
OBART06G03050 Oryza barthii OBART06G03050 N
OMERI06G03280 Oryza meridionalis OMERI06G03280 N
OMERI07G11550 Oryza meridionalis OMERI07G11550 N
ONIVA06G03980 Oryza nivara ONIVA06G03980 N
OPUNC06G02750 Oryza punctata OPUNC06G02750 N
ORGLA06G0029900 Oryza glaberrima ORGLA06G0029900 N
ORUFI06G03010 Oryza rufipogon ORUFI06G03010 N
OS06G0145800 Oryza sativa OS06G0145800 N
PGSC0003DMG400017627 Solanum tuberosum PGSC0003DMG400017627 N
POPTR_0008s14840 Populus trichocarpa POPTR_0008s14840 N
POPTR_0010s10260 Populus trichocarpa POPTR_0010s10260 N
PRUPE_ppa009776mg Prunus persica PRUPE_ppa009776mg N
Sb10g003170 Sorghum bicolor Sb10g003170 N
Si006951m.g Setaria italica Si006951m.g N