PDK_20s1371143g001 (Phoenix dactylifera)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 PDK_20s1371143g001 T291119_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.710 0.745
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.710 0.745
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.700 0.759
Q948S4_TOBAC
M11073_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBB_01 		0.672 0.752
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.669 0.759
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.662 0.730
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1371143g001 Myb 51 97
PDK_20s1371143g001 Myb 103 149
PDK_20s1371143g001 Myb 155 197

Links

Other Myb/SANT family TFs
Other Phoenix dactylifera TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.710
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.662
PK12011.1 Cannabis sativa PK12011.1 D 0.669
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.700
Q948S4_TOBAC Nicotiana tabacum Q948S4_TOBAC D 0.672
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.710
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.710
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.662
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.749
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.694
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.680
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.674
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.680
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.684
29794.m003447 Ricinus communis 29794.m003447 I 0.696
Pm018007 Prunus mume Pm018007 I 0.708
Cla023357 Citrullus lanatus Cla023357 I 0.680
Cla022565 Citrullus lanatus Cla022565 I 0.684
Ca_14925 Cicer arietinum Ca_14925 I 0.696
Ca_01884 Cicer arietinum Ca_01884 I 0.680
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.704
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.685
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.692
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.710
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.670
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.679
AMTR_s00009p00263240 Amborella trichopoda AMTR_s00009p00263240 I 0.692
PK22174.1 Cannabis sativa PK22174.1 I 0.669
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.684
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.682
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.684
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.664
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.685
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.685
MDP0000295807 Malus domestica MDP0000295807 I 0.681
MDP0000179225 Malus domestica MDP0000179225 I 0.674
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.684
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.679
gene19115-v1.0-hybrid Fragaria vesca gene19115-v1.0-hybrid I 0.677
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.690
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.699
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.684
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.682
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.684
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.662
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.662
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.662
OBART01G08110 Oryza barthii OBART01G08110 I 0.690
OB12G16480 Oryza brachyantha OB12G16480 I 0.691
OB01G18340 Oryza brachyantha OB01G18340 I 0.687
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.681
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.691
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.682
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.676
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.666
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.666
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.710
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.690
F775_05724 Aegilops tauschii F775_05724 I 0.701
Bra037045 Brassica rapa Bra037045 I 0.690
Bra034531 Brassica rapa Bra034531 I 0.705
Bra011376 Brassica rapa Bra011376 I 0.682
Bra008956 Brassica rapa Bra008956 I 0.662
Bo9g171130 Brassica oleracea Bo9g171130 I 0.662
Bo7g115810 Brassica oleracea Bo7g115810 I 0.726
Bo3g171130 Brassica oleracea Bo3g171130 I 0.705
Bo1g010040 Brassica oleracea Bo1g010040 I 0.682
MYB3R-2 Oryza sativa OS01G0841500 I 0.680
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.669
TCM_047091 Theobroma cacao TCM_047091 I 0.682
TCM_005402 Theobroma cacao TCM_005402 I 0.677
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.708
Si000842m.g Setaria italica Si000842m.g I 0.664
PRUPE_ppa022218mg Prunus persica PRUPE_ppa022218mg I 0.688
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.668
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.688
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.682
OS12G0238000 Oryza sativa OS12G0238000 I 0.691
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.682
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.691
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.680
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.682
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.694
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.694
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.690
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.683
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.690
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.680
GSMUA_Achr2G03880_001 Musa acuminata GSMUA_Achr2G03880_001 N 0.680