MDP0000132856 (Malus domestica)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 MDP0000132856 T321187_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.898 0.898
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.837 0.837
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000132856 RWP-RK 585 633

Links

Other RWP-RK family TFs
Other Malus domestica TFs

419 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I
Pm014329 Prunus mume Pm014329 I
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I
GLYMA18G04500 Glycine max GLYMA18G04500 I
MDP0000669451 Malus domestica MDP0000669451 I
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N
Ca_05046 Cicer arietinum Ca_05046 N
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N
28677.m000055 Ricinus communis 28677.m000055 N
29692.m000540 Ricinus communis 29692.m000540 N
cassava14484.m1 Manihot esculenta cassava14484.m1 N
cassava15077.m1 Manihot esculenta cassava15077.m1 N
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N
mgf008289m Mimulus guttatus mgf008289m N
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N
Traes_4DS_ADBA6E30A Triticum aestivum Traes_4DS_ADBA6E30A N
Pavir.Ia00840 Panicum virgatum Pavir.Ia00840 N
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N
Lus10017626.g Linum usitatissimum Lus10017626.g N
Lus10033583.g Linum usitatissimum Lus10033583.g N
ONIVA03G32670 Oryza nivara ONIVA03G32670 N
SLR1 Oryza indica BGIOSGA013420 N
BRADI1G11090 Brachypodium distachyon BRADI1G11090 N
GRMZM2G024973 Zea mays GRMZM2G024973 N
GRMZM2G144744 Zea mays GRMZM2G144744 N
LPERR03G26000 Leersia perrieri LPERR03G26000 N
MLOC_67940 Hordeum vulgare MLOC_67940 N
OB03G38380 Oryza brachyantha OB03G38380 N
OBART03G31370 Oryza barthii OBART03G31370 N
OGLUM03G31610 Oryza glumaepatula OGLUM03G31610 N
OLONG_002563 Oryza longistaminata OLONG_002563 N
OMERI03G27970 Oryza meridionalis OMERI03G27970 N
GAI1 Vitis vinifera VIT_01s0011g05260 N
OPUNC03G28530 Oryza punctata OPUNC03G28530 N
ORGLA03G0290200 Oryza glaberrima ORGLA03G0290200 N
ORUFI03G32650 Oryza rufipogon ORUFI03G32650 N
SLR1 Oryza sativa OS03G0707600 N
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N
Sb01g010660 Sorghum bicolor Sb01g010660 N
Si039400m.g Setaria italica Si039400m.g N
TCM_010965 Theobroma cacao TCM_010965 N
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N
TRIUR3_18790 Triticum urartu TRIUR3_18790 N