Cagra.0686s0010 (Capsella grandiflora)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Cagra.0686s0010 T323400_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL15
M07263_2.00 		Arabidopsis thaliana
DNWNTGTACGGAHN
NDTCCGTACANWNH		 Dap-seq
OMalley et al.(2016)
SPL15_col_a 		0.985 0.960
SPL15
M07264_2.00 		Arabidopsis thaliana
DNTGTACGGAHNNNN
NNNNDTCCGTACANH		 Dap-seq
OMalley et al.(2016)
SPL15_colamp_a 		0.985 0.960
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0686s0010.1.p SBP 61 135

Links

Other SBP family TFs
Other Capsella grandiflora TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10016802m.g Capsella rubella Carubv10016802m.g N
Traes_4BS_A05D3DC53 Triticum aestivum Traes_4BS_A05D3DC53 N
Traes_4DS_2CE9E3235 Triticum aestivum Traes_4DS_2CE9E3235 N
Traes_5BL_C02570726 Triticum aestivum Traes_5BL_C02570726 N
SCR Vitis vinifera VIT_08s0056g00050 N
Ca_09530 Cicer arietinum Ca_09530 N
Cla012346 Citrullus lanatus Cla012346 N
Pm002956 Prunus mume Pm002956 N
30073.m002204 Ricinus communis 30073.m002204 N
cassava25218.valid.m1 Manihot esculenta cassava25218.valid.m1 N
cassava36326.valid.m1 Manihot esculenta cassava36326.valid.m1 N
Cucsa.002880 Cucumis sativus Cucsa.002880 N
mgf012242m Mimulus guttatus mgf012242m N
Aquca_004_00566 Aquilegia coerulea Aquca_004_00566 N
Bostr.0697s0034 Boechera stricta Bostr.0697s0034 N
Cagra.0562s0013 Capsella grandiflora Cagra.0562s0013 N
TCM_017746 Theobroma cacao TCM_017746 N
Ciclev10011085m.g Citrus clementina Ciclev10011085m.g N
Eucgr.K01320 Eucalyptus grandis Eucgr.K01320 N
evm.TU.supercontig_1018.1 Carica papaya evm.TU.supercontig_1018.1 N
gene13644-v1.0-hybrid Fragaria vesca gene13644-v1.0-hybrid N
Gorai.005G001300 Gossypium raimondii Gorai.005G001300 N
Lus10016496.g Linum usitatissimum Lus10016496.g N
Lus10040734.g Linum usitatissimum Lus10040734.g N
MDP0000397638 Malus domestica MDP0000397638 N
orange1.1g014896m.g Citrus sinensis orange1.1g014896m.g N
Pavir.J08573 Panicum virgatum Pavir.J08573 N
SapurV1A.0208s0090 Salix purpurea SapurV1A.0208s0090 N
SapurV1A.1165s0100 Salix purpurea SapurV1A.1165s0100 N
Thhalv10010179m.g Eutrema salsugineum Thhalv10010179m.g N
chr1.CM1255.400.nc Lotus japonicus chr1.CM1255.400.nc N
OBART11G01460 Oryza barthii OBART11G01460 N
SCR Arabidopsis thaliana AT3G54220 N
BGIOSGA034703 Oryza indica BGIOSGA034703 N
BGIOSGA036912 Oryza indica BGIOSGA036912 N
Bo8g083500 Brassica oleracea Bo8g083500 N
Bra007056 Brassica rapa Bra007056 N
SCR Arabidopsis lyrata fgenesh2_kg.5__1811__AT3G54220.1 N
GLYMA09G40620 Glycine max GLYMA09G40620 N
GLYMA18G45220 Glycine max GLYMA18G45220 N
GRMZM2G015080 Zea mays GRMZM2G015080 N
GRMZM2G131516 Zea mays GRMZM2G131516 N
GSMUA_Achr8G09400_001 Musa acuminata GSMUA_Achr8G09400_001 N
LPERR11G01220 Leersia perrieri LPERR11G01220 N
LPERR12G01340 Leersia perrieri LPERR12G01340 N
MLOC_64716 Hordeum vulgare MLOC_64716 N
MTR_7g074650 Medicago truncatula MTR_7g074650 N
AMTR_s00077p00190160 Amborella trichopoda AMTR_s00077p00190160 N
OBART12G01190 Oryza barthii OBART12G01190 N
OGLUM11G01180 Oryza glumaepatula OGLUM11G01180 N
OLONG_010321 Oryza longistaminata OLONG_010321 N
ORUFI11G01380 Oryza rufipogon ORUFI11G01380 N
ORUFI12G01460 Oryza rufipogon ORUFI12G01460 N
SCR1 Oryza sativa OS11G0124300 N
SCR2 Oryza sativa OS12G0122000 N
PGSC0003DMG400016833 Solanum tuberosum PGSC0003DMG400016833 N
POPTR_0006s11500 Populus trichocarpa POPTR_0006s11500 N
POPTR_0016s15060 Populus trichocarpa POPTR_0016s15060 N
PRUPE_ppa001546mg Prunus persica PRUPE_ppa001546mg N
Sb05g001500 Sorghum bicolor Sb05g001500 N
SELMODRAFT_432115 Selaginella moellendorffii SELMODRAFT_432115 N
Solyc10g074680.1 Solanum lycopersicum Solyc10g074680.1 N